RnoEX0101659 @ rn6
Exon Skipping
Gene
ENSRNOG00000050497 | Zfp7
Description
zinc finger protein 7 [Source:RGD Symbol;Acc:1310636]
Coordinates
chr7:117948706-117951280:+
Coord C1 exon
chr7:117948706-117949203
Coord A exon
chr7:117950775-117950818
Coord C2 exon
chr7:117951154-117951280
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATAATTTCTCACAGGTG
3' ss Score
9.98
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
CACAGAATCCTAAGCTGGTGATTCAAGGGGAGTCTGACCCAGCAGGGATGACTTTCCCTGAAGGCCAGCTCTTCCAGCCTGCAGATAGGATTTTTCTCTCACGCAGCTCCGCTCACCAGCCACAGCGGCCCACAGCAGGTTAAACATTCTACTGTGGGCTCCGCCTCCGCTAGACGATCGCCGGAATCTGACCGAGTCCCCGCCTCTGGCCCCGCCTCCTGCTCGCGCCTCCGCCTTCCTTGACCTTCAGCCACACCTCCCGGCCCACACTCCACGTCCTGCCCTCAGACTCTAGACCAGCTCTTTACAGGGTGACAACTTGTGGCCCCGCCCCCGAGGTTACAGGAGTGGGGGCGATGCTGGAGAAGCAACTGGGTGCTTTGGCCTGCGAGCGGATCCGAACGGACGGAAGTCGGCCGGGTGGGACACAGAGGGATAGGCGTGCAAAGCCGTTTCCGGTGGCTAGATTGTTGGCGGGTCCCTGACGCGTCCCGGCCG
Seq A exon
GTGTCTGAGTCAAGACCAGCGGGTCCCACCCTCCCCATCTCATG
Seq C2 exon
GAGACGGTGACATTTGGCGACGTGGCTGTGCACTTCTCTCGGGAAGAGTGGCAATGTCTGGATTCCGGTCAGAGGGCCCTCTACAGGGAGGTGATGCTGGAGAACCACAGCAGTGTGGCTGGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050497_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=82.0)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGATAGGCGTGCAAAG
R:
CCTCTGACCGGAATCCAGACA
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]