BtaEX0041498 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1515774-1519867:+
Coord C1 exon
chr14:1515774-1516030
Coord A exon
chr14:1517412-1517456
Coord C2 exon
chr14:1519751-1519867
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGTAACCGCCAACAGGTC
3' ss Score
4.83
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
CCCCGCCCTCCTTGAACTGTGACCCCGCCCTTTACCGGATTCCGCCCCGCCCGCTCCGGGCTCTCTCGGTTCCCAAGCTACCTGGCCCCGCCCCGTCTCCGGCTTCCTAGGTTGGGGACTGGCTGGGAACCACCGAGTCGGCTGAGCCTCCGAACCGCCCAGAGCAACCGGAAGTCTGCGGGGCGAGCGGTCGCGAGCGACCGAGGCCCGTTTCCGGCGTCGTCGCGCTGCTAAAGTCTCCGGCTGGCCCCAGGAGG
Seq A exon
GTCTCTCAGCCAGGACACGTGGATTCCCACCCACCGAGCCTCATG
Seq C2 exon
CAGGATTCCTGGTCTTCAAGCCTGAGCTGATCTCCCGGCTAGAACAGGGGCAGGATCCATGGGTCCTTGACCTGCAAGGAGCAGAGGGGAGAGAGGAAGCCAGGACCACCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456_MULTIEX1-2/6=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.475
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAACCGGAAGTCTGC
R:
CCTGTTCTAGCCGGGAGATCA
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development