BtaINT0165987 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1517907-1519867:+
Coord C1 exon
chr14:1517907-1518060
Coord A exon
chr14:1518061-1519750
Coord C2 exon
chr14:1519751-1519867
Length
1690 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTCCTCTGCTGCCCCCACAGCAG
3' ss Score
7.69
Exon sequences
Seq C1 exon
CCAGGAGACTGGTGTGTGTCCTTTCAGGAGGCTGTGACATTTGGTGATGTGGCCGTGCACTTCTCGCGGGAGGAATGGCAGTGTCTGGACCCTGGCCAGAGGGCTCTCTACAAGGAGGTGATGCTTGAGAACCACAGCAGTGTGGCTGGACTAG
Seq A exon
GTGAGGCTTTATTTGGACACCCCTAGCCCTTCCATCATCGGTCAGCACCCACCTATTTTGGCCTCTGCTAGAGGCTGCAGATCTGGAGGCCATGTGTTCGAGCCCTCATGAGCTAGGCAGGGGCTTGGGACTGTGAGTCCTTGTGGGTCAGAAGCTGACCCCAGGAGGAGTCTTGGTGAGCCAAGCAGGCTCCCAGGTTTGCATACGTCATGTGATTCAGTGCTCACAGGGTAGGTGGACTTTCTGCCTGAGTGGGTAGAAATACAATCCAAACTTGAAATGGCTTAAACAGCTACTCAGATTTTCAATTTTTCTAGTGTGTACTTATTCAGAACACTCTTCATTTTTAATGTCTGTTATGTTTGTATTTGTTTCCCTTATTTATTTTTGCAGCATTTTTTCACTGTGTTGACCGTGATTGATACTGACTGCCATGAGACTGTTGTTTCATCTTTCAGAGACCCAGCTTGTGGGTTTTGGGGGGCAGGAGGGGCAGGGCGCTCCGTCACTGAGTCTTTCCGCCTTTCTTCCTTCTTCCCTTTTAATTTATTGGGTCTGCTGTGTTGTTTCTTTCCTTCATACCTTTTGGCTGTGCTCACAGTGTAGGTGGACTTTCTGCCTGAGTGAATAGAAATAGAATCCAAACTTGAAATAGCTTGAACAGCTACTCAATCAGATTTCTTACTGTTTCTTGAGCTTAGTATTTACCTGTTCTGTGTTTACCATTCTTGTTTCTAGTTGGTGTATTTAAAAACATGAAATTTTATGCGTAAATATCACTTCAGCTGCATCCTACGAATTGTAACTCACAGTAAATACAGTTGCCACTTTCTCACTCATCACATAGTTTCTGGATAGTCGTAGTTTTGAGCCACCCATTGTGGTTGCTGTTGTGTCCAGCTGCACTTGGGTCAGGTGCAGGCTGTGGTGGTGTTTCATGGCCTTTGCCTGACCCCCTTTCTGGCTGCCCAGGGACGTTTCTCTGTGAGCCGCACACGTGTGCTTGGCGGGAACCTATTTCCTGTCGAGTGTGGGGTCCTGCTGTCACCTGAGCCTTTGACCTTCTCTGCCTGCTGCCTTCTCCACCCCATGGCTGAACACCTGAGGAGTGCTCTAGCCAGAGGGCTTGACTGGCCCTTGGGTGGGCTGGGAGCACTTCACATGGCTGCCCCACAGCATGGGGGCTACTGGCCCCAGAAGGCAGGTGCCAGGGGGCGCCTGCCGGTCTCCAGCCCTCTGCTGAGGCCCTGGGCTCTGTGTGAGGACTTGAGACTGGGGCTGCTGGCTGATGATTGGGCTTCACACCTTCTGATTTAAAATCCATTTTGTTGGTTGATTTGTTGTTGTATTGTTTCTTAAGCAACCGTACCTCTTGGAGCATCCCTGAAGGGACTGAGGGAAGTGCTGGCTGTGCCTGCTTCTCTCCCCGTGGGGGATAGCTGGCCTGTGTTCTGCAGACTTGGGTGACAGGACTCCCTGGCGATCCTGGCCCTGTCTCCATCTGCAGCAGGGCCAGACAGGGAGTCCACTCGCTCCTCTCTGTCCAGCCTCAGGAGGCAGCAGGTCTGGACAGGAGGCCCCTATGCTCCAGTAGCCCCCAACCCTTCACTCCTGGGGACCAGGGAGAACTGAGCCCCGAGCTGCACTCCCAGCCACAATGATACCGTCTCCTCCTCTGCTGCCCCCACAG
Seq C2 exon
CAGGATTCCTGGTCTTCAAGCCTGAGCTGATCTCCCGGCTAGAACAGGGGCAGGATCCATGGGTCCTTGACCTGCAAGGAGCAGAGGGGAGAGAGGAAGCCAGGACCACCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456:ENSBTAT00000037366:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTGGTGTGTGTCCTTT
R:
GGGTGGTCCTGGCTTCCTC
Band lengths:
262-1952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development