HsaINT0188159 @ hg19
Intron Retention
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:13139]
Coordinates
chr8:146054863-146062892:+
Coord C1 exon
chr8:146054863-146054989
Coord A exon
chr8:146054990-146062775
Coord C2 exon
chr8:146062776-146062892
Length
7786 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTTCTCTGCCGCACACACAGCAG
3' ss Score
3.31
Exon sequences
Seq C1 exon
GAGGTGGTAACATTTGGCGATGTGGCTGTGCACTTCTCTCGGGAGGAGTGGCAGTGTCTGGACCCTGGCCAGAGGGCCCTCTACAGGGAAGTGATGCTGGAGAACCACAGCAGTGTGGCTGGACTAG
Seq A exon
GTGAGGCTGCACCTTGGGGCCCCTTCCCCTGCATCATCAGTCAGCACCCACCCAGCCAGGCCTCCATCAGAGGCTGGGGTATGCAGGCCAAACGCTCAGACCCTTGTGGGCTCCACAGGGGGCTTGGACTCATGAGTGGTGTGCCAGGCTGGTTCCTAGCTTTGCCCATGTCATGGGGTTCAGCCCCCAGGGAGTGGGTGGGATTCTGGGAGTTAGTAAAGCCTCTTTTTTTCCTAAGCTGTTAAATTGTGAGAAATAGAATCCAAACTTGAAATAGCTTAGACAAGAAAAGAGAAATTATTGGGTGGAGAAATCCAAGGAAAAGGTTGTGCAACGAGCAAGAGGTGGCAGCGACGCCCACACGGCTGCTTTGCAGATGCCGTCATCCCCTTGCCCCTCCTGTCCTGCCGTTAGTCTCCTCTCTGAACTCCACCACCGCCACAGGCAGCCACTGCGGTGCTCTTTATGTCCATGCCTGTGTCCTCACAAGCTGTATACTGTCGTTGGATTGCAACTTGGTGAGGGGGGGTGCGTCTTAACTTGGGCCTTGCTGGGCCTCTTGCCTGTGACTAAGCCCTCTGCTGCATCACACGCCCGAGAGAGTGCCTGGGCTGGGGGATCAGGAGTGGAACTGACGCGGGCATCGTTGGTTGGCCAGGAGCTTCTTGGGGTGTTGGACCAGGCCTGTCCCCCTCTGTCCCGGCTAGTCTGGCAAAGTCCAGCTTTCTGTTTTGCCAGTCAGATAAGTGTACAGTGGGAGGCTGTTGTAGTTTGAGTTTGCATTTCTCTGATTTCTGCTGAGCTTGAGCCTATTTTCACACCCTCATTAGCTTGCCAGGTTCTTCTGTGAAATATCTGTTCAGGGCATTTGCCCATATTCTAGGTCCGCTGTGTCTTATTGCTTTGAAGGTGTTGTTTCTTCATTCTGTCTAAGATGCCTTACTTTGTAAAACATGTAGTTATGTACACATCATTATTTTAAGAAAGTTGGAATGCTACTGATTACACGCATTTTTTAATCATTTAATTTTACTTTATACTTTTTAAAGAGCCCTCTTAGACTCATTTAGATGTGGTTTACCCTGTCTCACTGAAATAGGAAAAGACACATGCAGTGAGGGTCCTTTTTTTTTTTTTTTGAGATTTTGAGATGGAGTCTTGCCCTGTCACCCATGCCGGAGTGCAATGGCGCGATCTTGGCTCACCGCCACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCCGGAGTAAGGGTACTTCTAATGTTTCTTCACAGCTTTTAGTGACCCCACTCTCTGGTTTGGTTATCTGTGTCCATGCTTTCCACGTGATGGCAACCTGTGGGCCTGGCCATCTAGAGGTGCTGCAGCTTTTCGTAAGTGGTGTTGGGGTTTTCTTCATCCAGTGAGCTTGGTGCTTGAGCTTTCTTGCTTGGCATGTAGCAGCTCCATCTGCTGTGCCTGTCCTCCTCTCTCAGGCCCTGTGTGTACACAGTTGCTGATGTACCAGTAACTGGAATTGCAGTCATTCCCCCAGCAGCAGTTTGCTTCTCCAGGCTCAAAGGTACAGCTGCTGTTCTTTTTCCATGGCTTCTGTCTATTTATAACGTCCTGCTGCTGTGCCAAGTCACAGGGTAAAGCTTTTGAAGACAGTGTAGAGAGCAGCTGAATTCAGCATGTATTGTATGATGGTGCTGGTGACTTACCTGCAGCAGTGACTGAGCAGCTGGGGCAAGCTCGTGTGTGCACAGGCAGTGATGGTGTGTCACAGCTGCCACCTGGCGGATGACATCAATTCCTAGATGCGTCCAAGAGATGGGAAAGGGTTTTATAAAAACACTATCTTAGGGCCGGGCGCGGTGGCTCATATCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACAGGGTGAAACCCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCACGAGAATCGCTTGAACCCTGGAGGCGGAGCTTGCAGCGAGCTGAGATCGCACCACTGCAATCCGGCCTGGGCAACAGAGCGAGACTCCATCTAAAAAAAAAAAAAAAAAAGACTATCTTAGAATTTATAAAATATGGTAAGTACCAGGTTAGTTTTGTTTATTATAAATCACTTTTTCAGCCGGACATGGTGTTGCATGCCTGTAGTCCCAGCTACTGGGGAGAGCGAGGAGGGAGGATTGCCTGAGCCTGGAAGGTCAAGGTTGGAGTCAGCTATGATTGTGCCACTGCAGTCCAGCCTAGGCAACAGAGTGAGACCCTGTCTAAAAAAAAAATCTTCTCTGCTTCTTTTGTGTTTGTTAACTTTGTTAGGTCAGATTTTAATGTAATTACTGTGTTTTTGCCTTATGGATTGTCTCTTTGAAGTTTTATTTAAAAGTTCTGTCCGGGCACAGTGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCAAGGCGGGCGGATTGCCTCAAATCAGGAGTTCAAGACCAGCCTGGGCAACACAGTGAAACCCTGTCTTTATTAAAATGCAAAAAAAAAAAAAAATTAGCTGGGCATGGCAGTGTACACCTGTAGTCCCAGCTAATTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGGGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTATCTCCAAAAAAAAAAAAAGTTCTTCCCTGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTCAGAGTTTGAGACCAGCCTGACCAACATGGTGACACCCCGCCTCTACTAAAAATACAGACATTAGCCAGGCGTGGTGGCGGGTGGTTGTAATCTTGGCTTCTCAGGAGGCTGAGGCAGGAGAATTCCTTGAACCCAGGAGGCAGAGGTTGCACTGAGCCGAGATCACACCAGTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAGTTCTTCCCTCCTCCAAGGTCACTGAGATGGGCTTCATTTTCTCCTGTGGATTTTATAGTTTGTATTTCTCATCTGTATCCCAGCTCCACATTTGTATTGGGGTTACGTAAAAATCCCTGTTTTATTTTGTCCACACATAGCTGTTTTCCCCAACATCATCTATTAAACAGTCTCCTTGGCCAGGCTCGGTGGCTCACACCTGTAATCCCAGCACTTTGAAGTAGGCCGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCAGGCCAACATGGTGAAACCTCATCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCTACTCAGAAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGTTGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTTCAGTCTGGGCAATAAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAGACTATCTCCTTTTCCTGTTGACATGTGGAGCCACCATTTTCATCTATGAAATGGGATGTTTCTGAACCCTGTTCTCTTCCCTGAATCTCTCTTGTGGGCCAGCTTCCTGCTTTTGGTTTGTTTTGGTTTTTTTTTGTTTGTTTGTTCATTTGTGTTTTTGGCTTTTTTTTGAAATAAAGTCTCACCCTGTCACCTGGGCTGGAGTACAGTGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTTGTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGCTACTCAGGCATGTGCCACCACACCCGGCCAATTTTTTGTATTTTTACTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAGGTTATCCACCCACCTTGGTCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTACCTGGCCAGTTTGGCTTTGTTTTTTATTTTGGGGTGGTTTTTGTTTTTTGCTTTAATTTTGTAGTGTTTCTTAATACTACAAGAATACTAAAAGAATTAAACTCACCCGTTTAATTCTTTTTTTTCTGGGACGGAGTTTCGCTCTTGTTGCCCAGGCTCGAGTGCAATGGCGCGATCTCAGTTCACTGCAACCTCCGGCTGTTGGGTTCAAGTGATTCGCCGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACTACACCCGGCTAATTTTTATATTTTAAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTAACCTCAGGTGATCCGTCTGCCTCGACCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACCATGCCCGGCTGCATACTAATTTTAGAATAAGTTGAGTTCCTAAAAGCCACTGGAATTTTTATTGGGAGTGCTTTGAAACTGTTTTCTGTCAATGTAAAAGTTTTGATTTTTTTGCTTTGTGAATGTATTTTTAGCTGATTATTGCTGTAGTACAAAAATGCTGTTGGTTCTGGAGGATGATCTTACATCTGGCAACTTTGTGGAACTCCCTGGGTAAATCAGTGTTGCTCGGTGATTCTGCTGTTTTCCAGCAGGAGGATTCCTGCAAATGAGAGTTTGGTATTTTCCCTCCCAGCCCTCACTCCTCCCATCTCTGCCTTTGCAGTGGCCAGCACAGTGTTAAACAGGACCGTGTGGGCATGTTGTGTTCCTGATTTTAAAGGGAATGCATCTACATAACCACAGAATTTGGCTAAGGAGTTTTTTTTGTTTTTAATCATAAATACTGAATTTCAAATTCTTTTTCTGCATCATTTGAGACACGTGATTTATTTTCTTTATTAATGCAGGAAATTACATTGTTATATTTTCTTGTATTCCTGGAATAAGCCTTACTTAAATCACGATATTTATATATAAATTTTGATATGCCTTTGGATTCAACTAGCCAATATTGTATTTTTGTGTTTCTGTTCATAAGTGAAATGGATATATATATATATGTATATATATTTCCTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCGCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGCACTACAGGTGCCTGCCACCATGCTTGGCTAAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACTATGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCACCTGCCTTGGGCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGACTGGCCTATGTTTCTTTTTGTGTATTGTCCTTATGTAATTTTGACATGTTTGATAAATGGCATTTGGCATACAAGTAGAACTTGGTGGAGCTAATCTGTAAAACCATCGGGACCTTGAGCTTTTGGGGAAGGAAAGTCTTGGATTAGCATTTATGCATTTATATTTTCTTTTTTTTTTTTTTTAAAGAGTTGGGGTTTTGCTCTGTTGTCCAGCCTAGAGTACAGTGGTGCGATTATAGCTCACTGCAGCCTTGAACTCCTGGGCTCAAGTGATTCTTCCACTTGAGTTTCCCTAGTAGCTGGGACTATAGGTGTGCGCCACCATGCTCAGCTGTTTTTTCTTTCTTTGTAGAGTTGGGGTCTGTCATGTTGCCGCAGGCTAGTCTTAAACTTCTGGCCTCAAGCAGTCCTGCCTTGGCCTTCCAAAATGCTGGGATTATAGGCAGGAGACACCTTGCCTGGCATTTCCTTTGGTTTTAATCTGTTATATTTGTAATTGTGTCTCTTATTCTCTGTTTTTTGGCAGCATCTTCTCACTAAGTGGACCTTGATTGGTTTTGTCATCAGTCATATTCATGTTTTCAAATAACTGGCTTTTGGTTTTGCCTTTTTTGGGGGGTTGGGTTGGAGGATGTTTTTATTTGTCTTTGTTCTCTAGCTCTCTGAATCCTGCCCCGGATTTATTATTTTCTTCCTTTTTATTTATGTGAGTTTGATGTGTGTGGTGTTTGTTTGTTTTGCTTTTTTAATTTTTTGAGACAAAGTTTCACTCTGTTTCCCAGGGTGGAGTGCAGTGGCTTACTGCAGCCTGGACTGCCTGGGTTCCAGCGATCCTCCCACCGTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACCACGCCTGGCCATTCTCAACTTCTTGAACTTACTATTTACCTCATTTGTGTTTTAAAATGATCATTTCTAGTAAATGTATCTAAAAGTATAAAATTTTTCTGGGTATAGTGGCATATGCCTATAATCTCAGTTACTTAGGAGGCTGAGGCAGGAGGATTGTTTGAGCCCAGGAGTTTGAGGCCAGCCTGGGCAACATAGCGAGACCACATGTCTGCAAAGAATTTAAAAATTAGCTGGGTGTGGTGTCACGCACCTGTAGTCCTAGCTACTCAGTAGGTTGAGGCGGGAGGATTGGCCTAGGCTATAGTGAGCTGTGATGGTGCCACTGCACTCCGGCCTGAGTGCTAGAGCAAGACCGTATCTCTAAATAAATAACATTTTATCTTTACATACTGCTTGGGCTGCATCCTATAAATTCTGACTCATAATAAATACAGTTGCCACTTAGTCATTTATTATGTAGTTTCCAAGTAGCTAATGGCATCTAAGCACCATTTTGTGGTGAGTTTCACACTGAGTTGCATTTGCCTGGGCGCGTGTTCTGTGGTATGTTCTTTGGCATGTCTGTGACTCAGTTTGTGGCTTGACCCAAGGCTGTTTCTTTGTTCCACATGTACTTGGAGAGGATATGCATTTTCTGTTGAATGTGGAGTCCTGCCTGCATCTGGGGGTTTCAGCTTATTGGCTATAGGCCTTTGGAATCTCTGCCTGCCTCTTTCCTTCCAGTTGGGGGAACCCTGAAGGAAGCTTCTAAACAGAGGCCTTGGCTGGCCCATGGATCAACTGCTCATCTCTGTACTGACCGGCACAAAGAGGGTATGGGGGCAGGTGGCCCCAAGAAGGCAGGGTGCCAGGTGGGCCCCCACAGGTCTCTGCCACCCAGTCTGCAGCGAGGGAGGCAGGCCCTGAGGCATCCTTTGTGCAGGGACTTGAGGCTGGAAGGACACTGGCTGAGGACTGGACCTTGGAGCTTTCTGATGCAAAATGTGCTTCGTTTGTGTCTATTCATCGTTGTTTGTTACCTTATTTTGTAACCACCCCTGCCTCTTGGAGCATCTCTGCTCTCTGAACTGAGGGACAGGCCCGGTTCTGCTAAGTGAAGCTTGGGCTTCTCCTTCTCTTTCCCGAGTTCCAGGGGTAGAGGCGGACTGTCCTTTGCAGACTGTTTGGTGACAGGGTCGCCTGGAGATTGTGGGAGTCAGGTATCCCTTGCTGTCCAGCCACAGGAGGTGGACAGATCTGGACAGAAAGGGCTGCTGTGTCCCCAGATTCTCCCCACCCTCCACCCACTCTCCCTGCAGGAGCTTGGCCTGTGCCTTGTAGCCCCCCTGCCCCTTTCCATTTGGAAACTGGGGAAGACTTAGCCCTGTGCTGCACACTTCCCGTCATGCTGACACTGTTGTCTTCTCTGCCGCACACACAG
Seq C2 exon
CAGGATTCCTGGTTTTCAAGCCTGAGCTGATCTCTCGGCTGGAGCAGGGAGAAGAGCCATGGGTCCTCGACCTGCAGGGAGCAGAGGGGACAGAGGCACCAAGGACCTCCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789-ZNF7:NM_003416:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.450
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)