MmuINT0179738 @ mm10
Intron Retention
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76881112-76888347:+
Coord C1 exon
chr15:76881112-76881238
Coord A exon
chr15:76881239-76888230
Coord C2 exon
chr15:76888231-76888347
Length
6992 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CATTTCCTTTTCTCACACAGCAG
3' ss Score
7.33
Exon sequences
Seq C1 exon
GAGGCGGTGACCTTTGGCGACGTGGCTGTGCACTTCTCTCGAGAGGAGTGGCAGTGTCTGGATTCTGGTCAGAGGGCCCTCTACAAGGAGGTGATGCTGGAGAACCACAGCAGCGTGGCAGGACTAG
Seq A exon
GTGAGGCTCCCCCCCCACCCCCCAGGTCTGCTCCAAACCCCGGGCACGTGTCAGAGACGGGGGTGGGTGGGGGGGTGGGGGGGTGGGTGTGTGTGTGTGTGTGTGTGGTGCTAACTGCTTGGGCCTTGGGGGCTAAACCTTGAATCTGAGTTTGCCAGGCTAGCTCCAGGCTTTACACACATCACCTAGGTGATAGAGCCCTAGGTAAGTGGACCTCTGGGAACCGGTCAGACCGGTTTCTCCCATGCTGTTAAATTATCAGGTGAGAACTGGAACCCATACTTGAAGTAATAGCTTAAACAAAACAACAACAACCAAGAAAGAAAGAAAGAAAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAGAAAGATCCTTGTTAGTGTGAGGAATCTCCAGGGAAACCTGTTCTGGAACCAGTGACACCTCTGTCAATGCTTTCAGTCTGCCTTGCCATCAGACTTGACTCCTGTTCTTGCTACCTTCCCTGCAGGCTGCTCTAGCGCAGGCAGCTTTGTATTTTGCTTCACCTTTGTGGTAGAATGGAATGTCTTACTTGCTGGCAGCTGTGCATCTCACCTGTTACTGAGTCGCCTTCAGAGTTGACCCCACATGATGGTGGTACCTACAACAGGAGAGAGTGTCCTGGGTTCTTGAGGATGCCTGGGCTAGTGGATCAGGAGAGGGGAGGTAGGGATGGGGTGTAGTTGGTTTACCGGGTACCTCTCTCAGCATTAGAGCAGGCCTGTAACCATTCATCCAATCCAGCCTGGCAAAATCCAGTTTTGTGAGGTTTTGTCAGTAGGGTGTAGTAAGAGCTGGAGGATATGCAGGTCAATGGTAGAGCCTCACATTTAAAGCTGTCAGTGCCTAGCACCACAGAGAGCAAAAAGGAAGCAAGAAGACAAACCAAACAGGCTAGGCATGGTGTGCACGCCTTTAATCCCTGCACTCCTGAGGCAGAGGCAGGCTGATTTCTGAGTTCCAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAACAAAAAAAAAAACAACAACAAAAAAAGAAAACAACATCAAAACCAAAACAACAACAACAAAGAAAGTAAAACAACTTAAGATCCTTTTGTTTGTTTGTTTGTTTGTCTGACTGGTTTTTGAGGGTTCGGGCGTCCTTCCTGTCCTGTCCTGTCCCTGGTTGTTACTGTGTGAGTTCTAGAATCATGTCTCTGTGCAGCTCCTTTGCTTTCTTCTTCAGTGGTTGCTGTAACTAATTGACTTGTGGTGTTTAGGTGTTTAATATATCTTGTGTTAGATTCACCAGAACCAAAATGACCTGTTGTAAATACAGCACCTGAAATACACACCTTAGAATTTTTATATATATTTTATTTTACACACACACACACACATATATATATATAAATATATATATATATATATATATATACATATACATATACATACACATACATATACATATGTAAACCCATATAAACCCAGCTACTGAGTTTCATAAGGAGCTCTGCTGGTCTTTCCCTGCAGTTGCTGCTTCTATAATAAATGAGTTTCAACACCAAGTGGCTGAACATTTTATTCTTTTTGAGACACCAATCTCACTCTGCTGCCCAGTCTTGACCTTGCCCTCATTTGCATTTTCTCAGTGTTTGATCGTCATACACACACACATATATATATATATATATATATATATACACACATACATACACACTTTATTTTGCCCTATTTTGCGGGGGGGGGGGGGGGGGAAGGGGTGTTCGGGACAGGGTTTCTCTGTATAGCCCTGGCTGCCTTGGAACTGACTCTGTATGTAGCCCAGACTGTCTTCAAACTCAGAAACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTACTTTTTTTTTTTTAAGGAAAAGATATATTTATTTTACTTATTACTGTAGCTATCTTCAGACATACCAGAAGAAGGTATCTGATATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTCAGGAACTCTGGAAGAGCAGTCAGTGCTTTTAACTGCTGAGCCATCTCTCCAGCCCCCACCCCCACCCTTAGAATTTTAACATGGGATACTACTAATGATAGCACCAACAACTTAAACTTACTCCATACGTTGCAAGAGCCATCTTAAATGCACATCTGGTTTAACCCATGTCACTCTAATAAACAAAACACATGGAGGGTGTTCCGTTTGCTCAATCATCCCACAGACAACCAGGAAGGGTAATGATTTTCTTCTTTGAGATTTTACCTTTTGTGAGGTCAATGCCTGCCACGGACCACCCCAGTCGGGTATGGGGTCCCTGGAATGAGGGTCCTTGAAGCTAGTGGGTAAGGATTCAGTGGTGACAAACAGACAAGCACAGAGGCAGTGTCAATCTGAGTGCATTCTGCAGCTCTCAAGCAGGGGATTTTATACATTAAAAAAAAACCACATTACATCTCTTAGAAACTGTATCCAATGAAACAATCACAGATACCAACAAAAATCATTTGGCACAGTAAAGCACAAAAATCATCCAAGCATTACAACTCTGAAACTATGTATTCAGTGAATCACAAACAGAACAGGTGACATCACTATAAATCATCAAAATATAACAATTCAAAAAGATGTATTAAGTGGGGGCTGTCAAAGACTAGTGGCGTGTTTCCAGGAGCAGGTTAATCTTTAACGGTCAGTGCTCTTAACCTCTGAACTAACTTGCCAGCCCCATGGTCAGTTATTATTTAACATCTAATGCCTGATTTTTTTATAATCATCAATGTATAAATTTAAACTACTTTAATTTTTTCTAATTAAGGCTTTCTTTACCATATACCAAAATCCACCTCCGATGACACATTGTAGCCATATGAAATTTTATTGTTGGGAAATTTTTTATCATAATAGTTTTGTAAATGATTTAGAAAGTAAAGCGTTGGTTTCCATGGGGATAAGGTCATGTTAGTGGCCCCATCTCTAGGGATGGTTTCTTACCCATTATTACCGCTTAAGATCTTGGCCTAGGCTACCAGGAACATGTAAATAAGAAAAGGAATCAGAGGAAACAGAACAGAGAGATTGCCATGAGAACTACGGCTTCTCCAGTGAAGAGTTTCACAAGTGGTTCCAGGAGGCCTTTCCCCTTTTGAGGTCAATCGCTTCAGTCTGTGGAACTTGTCACACAGATCCTATTGGAGGTGGTGTGGCAAATGCCTAAGCTTTCTTGCCTAGTATTTAGCAGCCATGTCTTTTGTGTGGCTTGCAGTGACAGACCATACCTCTTTGTCTGTATTACATTGTATATACAGTTACTCTGTACCTGTGAGTGGGACTGCCAGTGGTTCCTTAGCAAAATACCCAGTTTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCTCCCTCCCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCTCGAGTGCTGGGATTAAAGGCGTGCACCATCACGCCCAGCTACTGAGTTTCATAAGGAGCTCTGCTGGTCTTTCCCTACTGTTTCTGCTTCTATAATAAATGAGTTTCAACACCAAGTGGCTGAACATTTTATTCTTTTTGAGACACCAATCTCACTCTGCTGCCCAGTCTTGACCTTGCCCTCATTTGCATTTTCTCAGCGTTTGATCGTCTGCTCAGCTTCTGTGCTTTACTGAGTTAGTTACTTTCTGCCCACTAGAGTATTCAGATTTTGTCCGTTTTATTTTTTGAGACAGGGTTTCAATATGTAGACCAGGCTGGCCAAACACCAACAGAAATATACTTACCTCTGCCTCCCGAGGGCTGGGTAATAAAGGTGTGTGCCATGCCTGGTTAGGTATTTATTTACTTATCTGTCTAATGTGTGTGAGTACACTGTCACTTTCTTCAGACACAGCACAAGAGGTTATGGGCATCTCTCCAGCCCCTAGATTTTTTAATTAATTCATTTATTTATTTATTTATTTAAAAGATTTATTTATTAATATGTAAGTACACTGAAGCTGTCTTCAGACGCACCAGAAGAGGGTATCAGATCTTGTTACAAATGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTTCCAGTTGAGTCATTTCTCCAGCCCTAATTTATTATTTTTTTATCAGCATATAAACAAGAAGTAAGACCCTGTCTCAAATTAACTTTTTATGTCTCAAATTGTCTTTTTATGATGACCTTAGTGGGCTCTGCTAAAGGACTTTCATCATCTTTTCACAGATTTCCCCCTTGGTTTTACTTTTTGTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTTCTTCCCAAGCACAGTTTCTCTGTGTAGCCTTAGCTGTCCTCTGTAAACCAGGCTGTCCTTGAGCTGAGAAACCCACCTGCCCATGCCTTCCAAGGTGGTCTCCTGAATCCCAAGCTGACCTCTCTGTACCTTTGACTCACACCATAGCTTAGAATGACTTGAACTTGAGACTGACTCTTGCCTACACCTCCCAACTGCTTCGTTTACATCTCTGGGCCACAATGCCCAATTTCTGTGATGATGCTAGGAATTCAACTCGGGATTGTGTGCGTGCTTGGCAAGCACTGTGCCAACCGAGACACTACCAACCCACTGGTCCTGTTGTGTCTTTGTTCCTCTTTTTTCTTGCCCACTTTGACTGTTTTTGTTCTTTTTTTTTTTCCAAAGATTTATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTTGTTCTTATTGATACAGATTTGTGGTTTTGTATTCAGAGCTTCTTCAGCTTGATGGGACTTTTTAGTTAATTTGAGACAGGGTCTTACTATGTAACCCTGCCCTGGAAATCACTATGTAGACTGCTTTGAAATCACAGAGAGTCATCTCCCTCCACCACCCAGGTATAAGGGATGAAAGGCATGAGCCACCGTGCCTGGCTTCTTGTTTATAGTAAATGTATTTTAAAATGTAAAATTTTAGCTTTATTGCTATAGCTACATTGTATAGATTTTGACTCATAATAAAAGTAGTTACTGCCTGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAGACCCTATCTTGAAAAACCAAAAAGAAAAGAAAAAACGTAGTTATCACTTAATGATTCATTGTTTATTTTCCAAATAGCTGATCGCCTCTGAATTGCCCTTTTGTGGTTACTGTCCTCTGAGCTATGCTGTTTTGTTGTATGCTCTTTGATGGGTCCACAACTTCTGGCCTGGCTTGACCCAAGGATGTTTGTTTCCTGATGAATGTGGGCCCCTGTCTGTACGGAAAGCTTGAGCCTGTTCTTGTACTGTGTGTTTAACCTTTTGATATTGTGACATATCCTTTCCAAGGTTCCCATTCATGAGCCTTACAATTGAATTACCAAAACAAAAAGACAACTCACATGTTAAATTAGTTCATGGTTTTGTGTTGGGCCACATTCCTAACTGTCTTTGTCTGCCTGTGGCTTGTAGGATGCAGGTTAGACATGACTGCTGGGTCTTGTACACTTGGCTGCCTCTCTTACCATGTTTTGAGAAGCCTGCCGTAATCTTCAAGCTTAGGGCTCTGTGAACTTTTCTGGTTTTTTCAATGTGTATGGGTGTTTTTCCTGGATGTATGTCTGTGTGTCTGCTGAAACTGGAGTTATGTACAGTTGAGAGTTGCCATGCCGGCATTGGGAAGTGTCTACTAGAAGAGGGATGAGTGCTCTTAACTGTTGAGCCGTCTCCAGCCCTGCTTCGTTGATCCCTGATTGGGTTATGCCTGCTCCACTTTTAGGAACTGGCCATAAAGGGAGTTTGGGATCACGACTTGTAATGTGAATCTGCTTCATTCATTTCATTACTATTTTGTTTGCTGTTTGTTTGTTTGTTTTGCTTTGTTGTTACGAGACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTCTGTAGACCAGTCTGTCCTTGAACTCAATAGAGATCTACCTGCCTCTGCCTCCTGAGTGTTGAGGTGAAAGGCATATGTTGTGTATCTTGGCTACTCCTACCTCTTGGAGTTTCCTTGCCTTTTGAACTGGGAGAAGAGAACACATGGCTTTGCAGAGCATGGTGCTGGCCTGGGCCTAAGCTTCCTTGCTCCGTTTTGCACCCCAAGTAGAAGCAGCCTGTTCTGTGATGATAGTGTTCCCTGAAGGTTATGGAAGTCTGGCTGCCCCTTTCTGTCTAGTCAAGAAGCTGGAGAGAAGGGACTCCTGTATACCCAGTGTCTTATCCCTCATCACCGTCCCTAGGTATATATAGGCTCTATATCCAGCAGCTCCTGTCCTTCATGGCTGGAAACTAGGAGGGTGGCTGGCTCCAGGACATGTTTCCAGCATTTCCTTTTCTCACACAG
Seq C2 exon
CAGGATTCCTGGTCTTTAAGCCGGAATTGATCTCCCGGCTGGAGCAAGGACAAGAGCCGTGGGTCCTTGATCTACAGGGAGCAGAGGGGACAGAGGCACCAAGGATTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669:ENSMUST00000023179:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types