BtaEX0041499 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1515774-1519867:+
Coord C1 exon
chr14:1515774-1516030
Coord A exon
chr14:1517934-1518060
Coord C2 exon
chr14:1519751-1519867
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTGGTGTGTGTCCTTTCAGGAG
3' ss Score
10.6
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
CCCCGCCCTCCTTGAACTGTGACCCCGCCCTTTACCGGATTCCGCCCCGCCCGCTCCGGGCTCTCTCGGTTCCCAAGCTACCTGGCCCCGCCCCGTCTCCGGCTTCCTAGGTTGGGGACTGGCTGGGAACCACCGAGTCGGCTGAGCCTCCGAACCGCCCAGAGCAACCGGAAGTCTGCGGGGCGAGCGGTCGCGAGCGACCGAGGCCCGTTTCCGGCGTCGTCGCGCTGCTAAAGTCTCCGGCTGGCCCCAGGAGG
Seq A exon
GAGGCTGTGACATTTGGTGATGTGGCCGTGCACTTCTCGCGGGAGGAATGGCAGTGTCTGGACCCTGGCCAGAGGGCTCTCTACAAGGAGGTGATGCTTGAGAACCACAGCAGTGTGGCTGGACTAG
Seq C2 exon
CAGGATTCCTGGTCTTCAAGCCTGAGCTGATCTCCCGGCTAGAACAGGGGCAGGATCCATGGGTCCTTGACCTGCAAGGAGCAGAGGGGAGAGAGGAAGCCAGGACCACCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456_MULTIEX1-3/6=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.475
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=78.8)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCGGTTCCCAAGCTACC
R:
TGGATCCTGCCCCTGTTCTAG
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development