MmuEX6054643 @ mm10
Exon Skipping
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76880739-76888347:+
Coord C1 exon
chr15:76880739-76880782
Coord A exon
chr15:76881112-76881238
Coord C2 exon
chr15:76888231-76888347
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTGGTGTGTGTCCTTACAGGAG
3' ss Score
9.1
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTGTCTGACTCAGGACAAGCGGATCCCACCCTCCAGATCTCATG
Seq A exon
GAGGCGGTGACCTTTGGCGACGTGGCTGTGCACTTCTCTCGAGAGGAGTGGCAGTGTCTGGATTCTGGTCAGAGGGCCCTCTACAAGGAGGTGATGCTGGAGAACCACAGCAGCGTGGCAGGACTAG
Seq C2 exon
CAGGATTCCTGGTCTTTAAGCCGGAATTGATCTCCCGGCTGGAGCAAGGACAAGAGCCGTGGGTCCTTGATCTACAGGGAGCAGAGGGGACAGAGGCACCAAGGATTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669-'1-5,'1-1,6-5=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGACTCAGGACAAGCG
R:
GCAAATCCTTGGTGCCTCTGT
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types