RnoEX0101660 @ rn6
Exon Skipping
Gene
ENSRNOG00000050497 | Zfp7
Description
zinc finger protein 7 [Source:RGD Symbol;Acc:1310636]
Coordinates
chr7:117948706-117953577:+
Coord C1 exon
chr7:117948706-117949203
Coord A exon
chr7:117951154-117951280
Coord C2 exon
chr7:117953461-117953577
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGTGTGTCCTTTCAGGAG
3' ss Score
11.71
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
CACAGAATCCTAAGCTGGTGATTCAAGGGGAGTCTGACCCAGCAGGGATGACTTTCCCTGAAGGCCAGCTCTTCCAGCCTGCAGATAGGATTTTTCTCTCACGCAGCTCCGCTCACCAGCCACAGCGGCCCACAGCAGGTTAAACATTCTACTGTGGGCTCCGCCTCCGCTAGACGATCGCCGGAATCTGACCGAGTCCCCGCCTCTGGCCCCGCCTCCTGCTCGCGCCTCCGCCTTCCTTGACCTTCAGCCACACCTCCCGGCCCACACTCCACGTCCTGCCCTCAGACTCTAGACCAGCTCTTTACAGGGTGACAACTTGTGGCCCCGCCCCCGAGGTTACAGGAGTGGGGGCGATGCTGGAGAAGCAACTGGGTGCTTTGGCCTGCGAGCGGATCCGAACGGACGGAAGTCGGCCGGGTGGGACACAGAGGGATAGGCGTGCAAAGCCGTTTCCGGTGGCTAGATTGTTGGCGGGTCCCTGACGCGTCCCGGCCG
Seq A exon
GAGACGGTGACATTTGGCGACGTGGCTGTGCACTTCTCTCGGGAAGAGTGGCAATGTCTGGATTCCGGTCAGAGGGCCCTCTACAGGGAGGTGATGCTGGAGAACCACAGCAGTGTGGCTGGGCTAG
Seq C2 exon
CAGGATTCCTGGTCTTTAAGCCTGAACTGATCTCCCGGCTGGAGCAAGGACAAGAACCGTGGGCCCTGGATCTACAGGGAGCAGAGGGGACAGAGGCACCAAGGATTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050497_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCAACTGGGTGCTTT
R:
GCAAATCCTTGGTGCCTCTGT
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]