BtaEX0041497 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1515774-1519867:+
Coord C1 exon
chr14:1515774-1516030
Coord A exon
chr14:1516501-1516552
Coord C2 exon
chr14:1519751-1519867
Length
52 bp
Sequences
Splice sites
3' ss Seq
GAGCCTGTACTTCTCTACAGGGA
3' ss Score
7.12
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CCCCGCCCTCCTTGAACTGTGACCCCGCCCTTTACCGGATTCCGCCCCGCCCGCTCCGGGCTCTCTCGGTTCCCAAGCTACCTGGCCCCGCCCCGTCTCCGGCTTCCTAGGTTGGGGACTGGCTGGGAACCACCGAGTCGGCTGAGCCTCCGAACCGCCCAGAGCAACCGGAAGTCTGCGGGGCGAGCGGTCGCGAGCGACCGAGGCCCGTTTCCGGCGTCGTCGCGCTGCTAAAGTCTCCGGCTGGCCCCAGGAGG
Seq A exon
GGACCCAGGATCCAGCACCGGGAGGCACATGCCTGCTGCTGGCCAGGCCCAG
Seq C2 exon
CAGGATTCCTGGTCTTCAAGCCTGAGCTGATCTCCCGGCTAGAACAGGGGCAGGATCCATGGGTCCTTGACCTGCAAGGAGCAGAGGGGAGAGAGGAAGCCAGGACCACCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456_MULTIEX1-1/6=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.475
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAACCGGAAGTCTGC
R:
CCTGTTCTAGCCGGGAGATCA
Band lengths:
146-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development