HsaALTA0009895-3/7 @ hg38
Alternative 3'ss
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144829043-144829604:+
Coord C1 exon
chr8:144829043-144829090
Coord A exon
chr8:144829445-144829522
Coord C2 exon
chr8:144829523-144829604
Length
78 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
AGAAGGGGGCTGGCACCCAGGGA
3' ss Score
-2.29
Exon sequences
Seq C1 exon
GTCTCTCGGCCAGAACACGTGGATGCCCACCCACCACTGAGCCTCATG
Seq A exon
GGATTCCTGGGGTGCTGGTGTGTGTCCTTTCAGGAGGTGGTAACATTTGGCGATGTGGCTGTGCACTTCTCTCGGGAG
Seq C2 exon
GAGTGGCAGTGTCTGGACCCTGGCCAGAGGGCCCTCTACAGGGAAGTGATGCTGGAGAACCACAGCAGTGTGGCTGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789-6-12,6-11,6-10,6-9,6-8,6-7,6-6-3/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCGGCCAGAACACGT
R:
CTAGTCCAGCCACACTGCT
Band lengths:
129-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains