HsaALTA0009895-2/7 @ hg38
Alternative 3'ss
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144829043-144829604:+
Coord C1 exon
chr8:144829043-144829090
Coord A exon
chr8:144829478-144829522
Coord C2 exon
chr8:144829523-144829604
Length
45 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
GCTGGTGTGTGTCCTTTCAGGAG
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTCTCTCGGCCAGAACACGTGGATGCCCACCCACCACTGAGCCTCATG
Seq A exon
GAGGTGGTAACATTTGGCGATGTGGCTGTGCACTTCTCTCGGGAG
Seq C2 exon
GAGTGGCAGTGTCTGGACCCTGGCCAGAGGGCCCTCTACAGGGAAGTGATGCTGGAGAACCACAGCAGTGTGGCTGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789-6-12,6-11,6-10,6-9,6-8,6-7,6-6-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCGGCCAGAACACGT
R:
CTAGTCCAGCCACACTGCT
Band lengths:
129-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains