HsaEX0074229 @ hg19
Exon Skipping
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:27815]
Coordinates
chr8:144769551-144772293:+
Coord C1 exon
chr8:144769551-144769648
Coord A exon
chr8:144771374-144771471
Coord C2 exon
chr8:144772227-144772293
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTGTTTCATCTCAGTTG
3' ss Score
7.49
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCCGGACTGCAGGGGTGCGATCTTGGCTCACAGCAACTTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATGACAG
Seq A exon
TTGCTGAACCTGTTTGCATGAGTTGCTCCTGACGGCCCTTTAGGATACTTCCATGTCTGTAGGGTCTAGAGTGACATCTCCTCCCCTCCCCTGACGAG
Seq C2 exon
ATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135-'5-6,'5-4,7-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGGGTGCGATCTTG
R:
TGGGAACAGCGAGGCCAC
Band lengths:
145-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)