HsaINT0188193 @ hg19
Intron Retention
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:27815]
Coordinates
chr8:144766622-144771471:+
Coord C1 exon
chr8:144766622-144766712
Coord A exon
chr8:144766713-144771373
Coord C2 exon
chr8:144771374-144771471
Length
4661 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GTTTGTCTGTTTCATCTCAGTTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
GGATAACAACTTCCGCTCGGGAAGTTTGTAAAAGTCTGGGCTACCGGCGCGGCGTAGTGGATGCAGCATCCTAGTGGAGGACGCCCCTGTG
Seq A exon
GTGAGTGCGCCCGTGTCCCCCGCCGCCCCTCCGTCCCTGGGTCGTGGGCTGTCAAACCTTCTAATTCTGCGGCCGCCCCAGGGCTGTGAGACCCAGCGTCGCGGCTGCTGGGACAGACCGGGGAGGCTGCCCGTGCCCTCGGCTATTCGGGGGCTGTTCTTCAGCTTCTTCCGGCTCGGCCTCCTCTTCTCTCCTCGCTCCTTACACTTGCAGGTTTGTCAGGACCCGGTTGCGTATCCTCTTGAAGCTGGTTTCTTCCTGGCCGACCCCGTCCGCGATCGTGACCTTAGTTATCCCTCATAGACACTTTCCACACCTGTGTCTCCAGCCCTATCGCTCCGATGAGACCCGAGCGCTTAGACTTGATTCATAACACCCAAAGCTCCCCGGCCCCAGGCTGAGCTCCTGCAACCTCCACACCCCACCCTCTGGTCCTCCCAGGCATTCCACCGCGAAGGGGAGGAGGCAGAAACCCGAGATTCGCTTCTTCTCCTTTCCTGCCCACGCCCAGCCACACAGTCACTGGTGCGTTAGCTCCATAACTGAACCATTTGCCTCCTTGCCATTCCCACCCTGTAAGTCCCAATCCTGGCCGTCTTCCTCTCTCACCTGAACGCCTCCCTGTCTTCTCCCCACCCCCATCCTGTTTTGCTGCTTTCTCATTTGTTCATCACAGAGGATCTTTTATAAAATGTAGCTTAGCCAGGCAAGGTGGCTCCCGCCTGTAATCTCAGCTCTTGGGAGGCCGAGGCAGGTGGATCACTTGAGTCCAGGAGTTCTAGACCAGCTTGGTCAGCATGTTGAAACCTTGTCTCTACAAAAAATACAAAAATTAGCCGGGTGTGGTGGTGCACGCCTGTAATCCCAGTTACTCTGGGGAGGCTGAGGCAAGAGAATCGTTTGAACCCAAGAGGCAGAGGTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACATCATCTTATTAAAAAAAAAAAAAAAAAAAAGGTAGCTTAGGCCGGATGCTGTGGCTGACGCCTGTAACCCCAGCACTTGGGGAGGCTGAGGCCAGAGGATCTCTTGAGGCCAGGAGTTTGAGATCAGTCTTGGCAACATAGTGAGACCCCGTTTCTGCAAAAAACTTAAAACAATTGCAGGGCATGTTGGCACATGCGCTTTTGGTCCCAGCTACTGGGGAGACTGAGGTGGGAGGATCACTTGAGCCCAGGAGGTCGAGGCTGCAGTGAGCTGTGATTGCACTACTGCATTCCAGCCTGGGTGACAGAGCAAGGACCTGCCTCAGAGAAAAAAAAATCCTGTGTTAATTTGCCTAGGGGAAAAAAAGTAGCTATGACAATATCCTTCTGTTCTCCCGTATTAAACTTTGTTGCATTACACATGAAACCACGGCTCAGGAGGCCTTGAGGAATCTGGCTTTAGCCCCTTTCCTGGCCTATCTCACGGTTCTCCCTGACTCTGCTTTCCAGGCTGGGAAGCCCAGTCCAGGTTGTGCAAACACAGCTGTTGAGCTGAGGGGAGAGGGTGTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTGAGATCGTCTCGCTCTGTCTCCCAGGCTGAAGTGCAGTGGCATAATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAGTTCTCCTGCTTCAGCCTCCCAAGTAGCCTGGCTAATTTTTTGCATTTGTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCCAAGTGCTGGGATTACAGGCGTGAACCACCGCGAATGGCCGGGAGCTGTTATTTTTATCACTGTGGTCATTGCTACTTGCTAGAGGAACTCAGCAAGGTGTTCTAATTGGAAAACACCACCCATGACCCATGTGCTCAGTGTGCCTTTTCATGTTTTTATAGACCGTTGTATAACTTTGGTTGAAGTGTCTGTTCTAATATTTTGCCCAGTTTAAATTTTATTTCTCTTTTTTATTGATTTGTAGGAGTTACAATTCTTTATATAAGTCCTTTGTCAGATACATGTATTGGGAATATTTTCTCTTAGTCTGTGGCTTACCTTTGTGTCTCTTTTTAGAAAAAAAAATTTAAACAATAGAGACAGAGGTCTCCCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGCAATCCCCCTGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCCGTCTCCTTTTTTTTTTTTCTTAACTGCCTTGGTAAACAAAAATTTTTAATTCTGATAAATCCAATTTGTGATTTTTTTTTTTTTTTGAGACGGAGCTTTGCTTTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATATCGGCTCGCCGCAACTTCTGCCTCCTGGGTTCAAGTGAATCTCCTGCCCCAGCCTCCTGAGCAGCTGGGATGACAGGCAAGTGCCACCACGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGCCAGGCTGGTCTCAAACTCCGTACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCATCCGGCCTGAATTTGTAATTTTTTAAAAGTGCTTTTAGGGATCCATGAAAGAAATGTTTGTCTACCCCAATGTTGTGAAGATGGTCTCTCTGTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTACAACCTCTACCTCCAGTTTGTGTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTAAGACGGAGTTTTGCTCTTGTTCCCCAGGCCGGACTGCAGGGGTGCGATCTTGGCTCACAGCAACTTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATGACAGGTGCCTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATATTGGCCAGACTGGTCTCAAACTCCCCACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTCTAGGCATGAGCCACCACGCCCGACCTACTTCTTTCTTTGTAATCTTATGGCTTTATGTGTTTTTTCTACCTCCTTGCACTGACTCAGGCCTCCAATAAGGTGACAGAGAGAAGCAGTGGGCAGACAGCCCTGCTTTTTCCTGGTCTCAGAGGGAAAGAGCTCCGTAGTGGCCCATGAAGCAGGATGTTGGTTGCAGGTCTGCCGGGTTGAAGAAGTTCTCTTCTGTTCCTTGTTTGCTGAGAGTTTTTGTTGGGATTAGGTGTTGAATTTTAACAAATGCCTTTTCTGCAGCTATTGAGATAATAGCTGTTATATGGTTTTCTCCTTTATTCTGTTAATTTGGTTAGTTATATCATTTTCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTACAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCGTGCCATTCTCCTGCCTCAACTTCCCGAGTAGCTGGGACTGCAGGCTCGTGCCACCACGCCCGGCTAATTTTTTGTTTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGAGTTATGTCATTTTCAAATGACAGCAAATGTTGGGGATTAACATTGTGATTAAAGTTGATGCTATGCTGTTGAAAGAGTGAAAAAAAAATATCAAGTTGAAAAGCATATTCATGAAAACATGTAGCAGTTAATGTAACCACCTGTGAGTGTCAGAAGGAGAAAGGGAATGTCTGTGTACCTGCTGTGCTGGAGGTGGGAGGGACGAGGGGTCAGGGGTGAACGCCGAGGGAGCCGCCCCATGCAGTGAGTGTTGAGTGCAGGTGGTGGAGGGAGCCTCCTGGGCACCAACTGCAGTTAATGGGGATCAAACCAGCTGTGTACTCTTAGGGTCCATGTCACTTGGTCATGACAGAGAATTCTTTTTATAAACTGCTGGATTTGGCTTCCTAATATTTTTTGAGAATTTGTGTTTATGAGAGTTTGGTAGGTAATTTTTTTGTAATATCTTTTTTTTTTTTTTTTTTTTTTTCAGACAGCGTCTCAGTCTAACATCCAGGCTGGAGTGCACTGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCATATTCAAGCAGTCCCCCCACCTCAGCCTCCTGAGTAGCTGGGACTGCATATGTGCACTGCCACGCCCCGCTAATTATTGTATTGTTTATAGAGACAGGCTGGGCAACTGCTGGGCTCGAACAGTCCTCCTGCCTCAGCCTCCTAGGGTGTTAGGATTACAGGCGTGAGCCACTGTGCTTGGCCCCTTGTAATATCTCTGTCAGGTTTTCGGTTTGGGTTTTGCTGGCCTCATTAAGACAGACTGGATAGCGTCTGCTCTTCCTCTGTTCACTAAATAGCTTCTAAGATCAGTACTGTGCTTCCGTAGGCTTTGGTGGAGTTTACCAGGGAATCCAGCTGGGTGTGGTATTTTCTGTGTGGGAAGGGTTCCAGTTACATTTTCAATTGCCTTATCAGATGGAAGGCTTCCCTTTCTTTTGTCAGTTTCATGATACTGTGTTTTTCATCGAGTTTGTCTGTTTCATCTCAG
Seq C2 exon
TTGCTGAACCTGTTTGCATGAGTTGCTCCTGACGGCCCTTTAGGATACTTCCATGTCTGTAGGGTCTAGAGTGACATCTCCTCCCCTCCCCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135-ZNF707:NM_001100598:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)