HsaEX0074251 @ hg19
Exon Skipping
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:27124]
Coordinates
chr19:21264965-21281117:+
Coord C1 exon
chr19:21264965-21265154
Coord A exon
chr19:21266784-21266875
Coord C2 exon
chr19:21280991-21281117
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGGTTTATTTTCTTCCATAGGGC
3' ss Score
11.21
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AGCTGGAGCGGACAGGACGGCTTCGGGGATGTGGCGGGGCCTTTGTCTCTCGCTGCAGCTGGAGCTGCAGGTCTCGCCTTCACTGCCCTGTGTCCTCTGCTCGCAGAGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGAGAGATCCACAGCTAAGACGCCAGGTACCCCGGAAGCCTAGAAATG
Seq A exon
GGCGACCTGAGGTCTGGAGTGTATCCTCTCAAGGGAGCAAGTGGATCCCTGGGGCAGAGAGGAAGCTTCTAGTGTACTCTTACTTTGAAAAG
Seq C2 exon
GAGACGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGGAATGCCTGAACCCTGCTCAGCAGAATTTATATATGAATGTGATGTTAGAGAACTACAAAAACCTGGTCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACTGCCCTGTGTCCTCT
R:
GCATTCCCACTCCTCCAGAGA
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)