HsaINT0188224 @ hg19
Intron Retention
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:27124]
Coordinates
chr19:21264953-21266875:+
Coord C1 exon
chr19:21264953-21265154
Coord A exon
chr19:21265155-21266783
Coord C2 exon
chr19:21266784-21266875
Length
1629 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGGTTTATTTTCTTCCATAGGGC
3' ss Score
11.21
Exon sequences
Seq C1 exon
AATCAGGCCTGCAGCTGGAGCGGACAGGACGGCTTCGGGGATGTGGCGGGGCCTTTGTCTCTCGCTGCAGCTGGAGCTGCAGGTCTCGCCTTCACTGCCCTGTGTCCTCTGCTCGCAGAGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGAGAGATCCACAGCTAAGACGCCAGGTACCCCGGAAGCCTAGAAATG
Seq A exon
GTGAGAGTGCCGGGTCCGACATCCCGAGAGAGGGGAAGGGGCGGGTTGTAAGCGGTGGGAAGTGGCTGTGGTGGGACTTAGGCCTCCCCGCAGTCAACTCTACAATCTGCGCCCGGAGTTCTCCTTGCTCAGCTCGGCCTCAGTCCCCTTCAGCCATAAGATGGCGGCTGCGCTGACTGCGGGATCCCGGGCGTCCTGTCTTTTCCCTGCGCAGTGACTGGGCCCTGACCTGGAGTCCTCTCAGGGCAGCTCTGGACCCTCAGCGGCGCGTCTCTCCCGGATTGTGCAGGGACCACTGGAGGGTCCCAGGGGTAGAATCCTGACTCGGGGTGCGGGTTTATGAATGGGTCCGTGGGGTTCCAGTTCCTCTTCTGTTGAAAATGTATGGGAGTCACCGTTAAAACACTAAAGCATTTAATCAAAGCGTGATTCAAAAATTGTGGAGCACCCAGCTGTGGTTTGTAATTTATGGTTTATGGGCGGGGCTTGAAGTAAAGACTTTTATAAACAGCATGATGAAGAAAACCAAATTCAGTAATTGGTTAGGTTCAGATACATAGTTTCTTAATTTGTAAAATAAAGGTGAAAATTTCCTGGTTATGTAATTAGATGTTAATTGGCAGTTTATAGTTGGTTAAGGATGAATTTTGTTTCTCTCAATGTAGTAATTTACTAAAAATGCACCTCAGTTAGATTTTTTTTTTTTAAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGGGCGATCTTGTCTCACCGTAACCTCTGCCTCCCGGGTTCAAGCGATCCAATGCTTCAGCCTCCCAGGTAGCTGGGATTACAGGCATGCGCCACCACGCCCGTCTAATTTTGTGGTTTTAGTAGAGACGGGTTTCTGCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCCTCCACGGCCTCCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAGATTTTTTTAAAAGTAGGAATCCAGGGACTAGAGACACCTCAGTCTAATTTCCCGCCGCTTAATTATTTTCACACTCCATGGGGAACTGATTTTCTGGTGCATTTTTCAACTGTGTCCCAAGCACTGTCTTAAATCTAACCTCCCGTCCCCCATATCTCCAGCCTCACTCTGGCTTGCAGTAAGATATTAAATTTCCAGTTCCTCCTGGCATTCCCTAATGCCAGCTTTTCCTCCCTAATTCACGTTATCACCTGTTTGTCTTTTAGTGTACTTTTGTATACCATATTTTAATTAATTATTTTTTGACAAAGCTTTAAATGACGCTTTTTAAAAGGTTTGTTACCTGTTTGTAACTTTCCCATGAGAAGAAAGCAAAGAATAATCCCCTGACACTGTATTGTAAAATTTCTCTGTGCCTCTTCTCCTTGTATCTTCTCTAGGTACAAAGATCTTGTCAGAATGTTTTTGGGTCAAGGTATTCCTTTGAAACCTTTATGAGGTGATGTGTCCTCAGCCACCCTTTAGTTTTTTTCTGGTCGTGGGTTTCAGTACTGTCTGGGGATCAACCAAGATATCCACCATGGTTATGTCAGCTAAAGTGCCTAGTGAATATCAGCTTCTGGTTTATTTTCTTCCATAG
Seq C2 exon
GGCGACCTGAGGTCTGGAGTGTATCCTCTCAAGGGAGCAAGTGGATCCCTGGGGCAGAGAGGAAGCTTCTAGTGTACTCTTACTTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352-ZNF714:NM_182515:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGGCCTGCAGCTGGAG
R:
AGTAAGAGTACACTAGAAGCTTCCT
Band lengths:
286-1915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)