HsaINT0188224 @ hg38
Intron Retention
Gene
ENSG00000160352 | ZNF714
Description
zinc finger protein 714 [Source:HGNC Symbol;Acc:HGNC:27124]
Coordinates
chr19:21082200-21084069:+
Coord C1 exon
chr19:21082200-21082348
Coord A exon
chr19:21082349-21083977
Coord C2 exon
chr19:21083978-21084069
Length
1629 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGGTTTATTTTCTTCCATAGGGC
3' ss Score
11.21
Exon sequences
Seq C1 exon
TTTGTCTCTCGCTGCAGCTGGAGCTGCAGGTCTCGCCTTCACTGCCCTGTGTCCTCTGCTCGCAGAGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGAGAGATCCACAGCTAAGACGCCAGGTACCCCGGAAGCCTAGAAATG
Seq A exon
GTGAGAGTGCCGGGTCCGACATCCCGAGAGAGGGGAAGGGGCGGGTTGTAAGCGGTGGGAAGTGGCTGTGGTGGGACTTAGGCCTCCCCGCAGTCAACTCTACAATCTGCGCCCGGAGTTCTCCTTGCTCAGCTCGGCCTCAGTCCCCTTCAGCCATAAGATGGCGGCTGCGCTGACTGCGGGATCCCGGGCGTCCTGTCTTTTCCCTGCGCAGTGACTGGGCCCTGACCTGGAGTCCTCTCAGGGCAGCTCTGGACCCTCAGCGGCGCGTCTCTCCCGGATTGTGCAGGGACCACTGGAGGGTCCCAGGGGTAGAATCCTGACTCGGGGTGCGGGTTTATGAATGGGTCCGTGGGGTTCCAGTTCCTCTTCTGTTGAAAATGTATGGGAGTCACCGTTAAAACACTAAAGCATTTAATCAAAGCGTGATTCAAAAATTGTGGAGCACCCAGCTGTGGTTTGTAATTTATGGTTTATGGGCGGGGCTTGAAGTAAAGACTTTTATAAACAGCATGATGAAGAAAACCAAATTCAGTAATTGGTTAGGTTCAGATACATAGTTTCTTAATTTGTAAAATAAAGGTGAAAATTTCCTGGTTATGTAATTAGATGTTAATTGGCAGTTTATAGTTGGTTAAGGATGAATTTTGTTTCTCTCAATGTAGTAATTTACTAAAAATGCACCTCAGTTAGATTTTTTTTTTTTAAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGGGCGATCTTGTCTCACCGTAACCTCTGCCTCCCGGGTTCAAGCGATCCAATGCTTCAGCCTCCCAGGTAGCTGGGATTACAGGCATGCGCCACCACGCCCGTCTAATTTTGTGGTTTTAGTAGAGACGGGTTTCTGCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCCTCCACGGCCTCCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAGATTTTTTTAAAAGTAGGAATCCAGGGACTAGAGACACCTCAGTCTAATTTCCCGCCGCTTAATTATTTTCACACTCCATGGGGAACTGATTTTCTGGTGCATTTTTCAACTGTGTCCCAAGCACTGTCTTAAATCTAACCTCCCGTCCCCCATATCTCCAGCCTCACTCTGGCTTGCAGTAAGATATTAAATTTCCAGTTCCTCCTGGCATTCCCTAATGCCAGCTTTTCCTCCCTAATTCACGTTATCACCTGTTTGTCTTTTAGTGTACTTTTGTATACCATATTTTAATTAATTATTTTTTGACAAAGCTTTAAATGACGCTTTTTAAAAGGTTTGTTACCTGTTTGTAACTTTCCCATGAGAAGAAAGCAAAGAATAATCCCCTGACACTGTATTGTAAAATTTCTCTGTGCCTCTTCTCCTTGTATCTTCTCTAGGTACAAAGATCTTGTCAGAATGTTTTTGGGTCAAGGTATTCCTTTGAAACCTTTATGAGGTGATGTGTCCTCAGCCACCCTTTAGTTTTTTTCTGGTCGTGGGTTTCAGTACTGTCTGGGGATCAACCAAGATATCCACCATGGTTATGTCAGCTAAAGTGCCTAGTGAATATCAGCTTCTGGTTTATTTTCTTCCATAG
Seq C2 exon
GGCGACCTGAGGTCTGGAGTGTATCCTCTCAAGGGAGCAAGTGGATCCCTGGGGCAGAGAGGAAGCTTCTAGTGTACTCTTACTTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160352:ENST00000456283:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTCTCGCTGCAGCTG
R:
TTCAAAGTAAGAGTACACTAGAAGCT
Band lengths:
238-1867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains