HsaEX0074255 @ hg38
Exon Skipping
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:HGNC:29448]
Coordinates
chr3:75716419-75741368:-
Coord C1 exon
chr3:75741276-75741368
Coord A exon
chr3:75732060-75732121
Coord C2 exon
chr3:75716419-75716541
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTCCTTCCCAAAGGTG
3' ss Score
10.48
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGCATTACATTACCAAACCTGAGATGATCTTCAAGCTAGAGCAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCCAAACCTGAGACTTTCAG
Seq A exon
GTGGAAGCAAGAAGCAAGTTTTCTCAGGTATTTGCCACAGGAGCCTGGTGGAGCTCCAGGAG
Seq C2 exon
GCTAAGCCTCCCTCCTTTTGGTAGAGGCTTTTTTATACCATTTGGGAACTGGTTTGGATAAGCTACCTTAATGAAGGACGACACATCCCTCCAGAGATGATAAAAGACTTTTTGTCTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124_MULTIEX1-8/9=6-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAGAGCCATGGATAGT
R:
TCTCTGGAGGGATGTGTCGTC
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development