HsaEX0074272 @ hg38
Exon Skipping
Gene
ENSG00000267886 | CTD-2291D10.4
Description
NA
Coordinates
chr19:23075201-23095440:+
Coord C1 exon
chr19:23075201-23075387
Coord A exon
chr19:23095012-23095154
Coord C2 exon
chr19:23095263-23095440
Length
143 bp
Sequences
Splice sites
3' ss Seq
GATGTGTTGACTCTTTCCAGTTC
3' ss Score
7.19
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTTGGCGGGGTCTTTGTCTCTCGCTCCCGCCAGAGCTTGGGATCGGTCTTCACTGTTCCGCGTCCTCTACCTGGGAACCACCGACCCCCGCCCGGCGACTTTGTCACAGACTCTGTTGCCCTGTGATCTGCAGGTCCTGGGAGACGCACAGCCAAGATGCCAGGGCACCCTGGAAGCTGTGAAGTG
Seq A exon
TTCAGATGCATAATCTCATCCCTGAACATCCTGCTGGTGCGATTATGACATATGATTTTACCCAGCACCAGAGGGATTTGATGCTCCTGCCTGGGCCCAACTCACAGAAGGGATTGTGACATATCACTGGACCCAGCACTGAG
Seq C2 exon
GGGACATTGTGTAATATCGTTGGGCCTCACACGTACGTTATGTGACTCTCCTGCGTGTGCCCTGTCCATGTGGGCCATTGTGACATATTGCTGGGTCCAACAACTGGTTGATGTAGCTCTACTGCCTAGGTCCTGCCTATGGAGGACTTTGTGATGTATCCCTGAACCCATCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267886-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
71%=100=50%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTTGGGATCGGTCTTC
R:
ATGTCACAATGGCCCACATGG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development