HsaEX0074272 @ hg19
Exon Skipping
Gene
ENSG00000183850 | ZNF730
Description
zinc finger protein 730 [Source:HGNC Symbol;Acc:32470]
Coordinates
chr19:23258003-23281215:+
Coord C1 exon
chr19:23258003-23258189
Coord A exon
chr19:23277814-23277956
Coord C2 exon
chr19:23281142-23281215
Length
143 bp
Sequences
Splice sites
3' ss Seq
GATGTGTTGACTCTTTCCAGTTC
3' ss Score
7.19
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTTGGCGGGGTCTTTGTCTCTCGCTCCCGCCAGAGCTTGGGATCGGTCTTCACTGTTCCGCGTCCTCTACCTGGGAACCACCGACCCCCGCCCGGCGACTTTGTCACAGACTCTGTTGCCCTGTGATCTGCAGGTCCTGGGAGACGCACAGCCAAGATGCCAGGGCACCCTGGAAGCTGTGAAGTG
Seq A exon
TTCAGATGCATAATCTCATCCCTGAACATCCTGCTGGTGCGATTATGACATATGATTTTACCCAGCACCAGAGGGATTTGATGCTCCTGCCTGGGCCCAACTCACAGAAGGGATTGTGACATATCACTGGACCCAGCACTGAG
Seq C2 exon
GTTATGTGAATCCTCTTCTTCCCAGATCCTGCCAAAAGGAAAGATTGTGACATATCACTGGAACCAGCACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183850_MULTIEX1-1/7=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGCGGGGTCTTTGTCTC
R:
GTGCTGGTTCCAGTGATATGTCA
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)