HsaEX0074276 @ hg19
Exon Skipping
Gene
ENSG00000183850 | ZNF730
Description
zinc finger protein 730 [Source:HGNC Symbol;Acc:32470]
Coordinates
chr19:23258003-23317008:+
Coord C1 exon
chr19:23258003-23258189
Coord A exon
chr19:23281142-23281215
Coord C2 exon
chr19:23316882-23317008
Length
74 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTCATCACCTAGGTT
3' ss Score
8.47
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATTTGGCGGGGTCTTTGTCTCTCGCTCCCGCCAGAGCTTGGGATCGGTCTTCACTGTTCCGCGTCCTCTACCTGGGAACCACCGACCCCCGCCCGGCGACTTTGTCACAGACTCTGTTGCCCTGTGATCTGCAGGTCCTGGGAGACGCACAGCCAAGATGCCAGGGCACCCTGGAAGCTGTGAAGTG
Seq A exon
GTTATGTGAATCCTCTTCTTCCCAGATCCTGCCAAAAGGAAAGATTGTGACATATCACTGGAACCAGCACTTAG
Seq C2 exon
GGAGCGTTGACATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGTCTGGACACCGAACAACAGAATTTATATAGAAATGTAATGTTAGATAACTACAGAAACCTGGTCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183850_MULTIEX1-5/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGACTTTGTCACAGACTC
R:
CTGTTGTTCGGTGTCCAGACA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)