HsaEX0074277 @ hg19
Exon Skipping
Gene
ENSG00000183850 | ZNF730
Description
zinc finger protein 730 [Source:HGNC Symbol;Acc:32470]
Coordinates
chr19:23281142-23317008:+
Coord C1 exon
chr19:23281142-23281215
Coord A exon
chr19:23282852-23283161
Coord C2 exon
chr19:23316882-23317008
Length
310 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTCTTCCCACTTAGGCT
3' ss Score
9.49
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GTTATGTGAATCCTCTTCTTCCCAGATCCTGCCAAAAGGAAAGATTGTGACATATCACTGGAACCAGCACTTAG
Seq A exon
GCTATTGTGACATATGCCTGAGGCTAACACCCAGATGATATAAGTCTTCATCCTGGACCCTGTCTACAGAAGTCATTGCGATATATGTCTTCACCAATCACTGAGGTCGAACGCCCAGTGATGTGACTCTCCTTCCTGGTCCATGCCCTCAGGGAAGATTGTGACATACCCCGGCCCAGCACACAGTTAATGTCACTCTTGTGCTTGCTGTCTACCCATGGGTAGGATTGTGACATATATCGTGGCCAAGCACAAAGATGTAATGACTGTCATACCTCGAAGAAAGCAATAGAGTTAATGTTGCTCCTAG
Seq C2 exon
GGAGCGTTGACATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGTCTGGACACCGAACAACAGAATTTATATAGAAATGTAATGTTAGATAACTACAGAAACCTGGTCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183850_MULTIEX1-6/7=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAATCCTCTTCTTCCCAGA
R:
CCAGGAAGACCAGGTTTCTGT
Band lengths:
198-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)