HsaEX0074270 @ hg19
Exon Skipping
Gene
ENSG00000183850 | ZNF730
Description
zinc finger protein 730 [Source:HGNC Symbol;Acc:32470]
Coordinates
chr19:23299777-23317008:+
Coord C1 exon
chr19:23299777-23299978
Coord A exon
chr19:23302818-23303032
Coord C2 exon
chr19:23316882-23317008
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTCTCAGGCA
3' ss Score
10.7
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AATCAGGCCCGCAGCTGGAGCAGACAGGGCGGCTTCCGGGATTTGGCGCGGCCTTTGTTTCTCGCTGCCGCCGAAGCTCCAATTTTCGTCTGTCTGCTTTGTGTCCTCTGCACGTAGAAGCCCAGCCTGTGTGGCCCTGCGACCTGCGGGTATTGGGAGATCCACAGCTAAGACGCCAGGGCCCCCTGGAAGCCTAGAAATG
Seq A exon
GCAGAGCCTCGCTCTGTTGCCCAGGCTGAAATGCAGTGGTGGGATTTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCCAGGACTACAGGCGGGTGCCACCATGACCGGCTAATTTTTGTATTTGTAGTAGAGACAGTATTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTAACCTCAG
Seq C2 exon
GGAGCGTTGACATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGTCTGGACACCGAACAACAGAATTTATATAGAAATGTAATGTTAGATAACTACAGAAACCTGGTCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183850-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
80%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=WD(100=87.0)
C2:
PF0135222=KRAB=WD(100=100.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCGGGATTTGGCG
R:
CCAGGAAGACCAGGTTTCTGT
Band lengths:
299-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)