HsaEX0074274 @ hg19
Exon Skipping
Gene
ENSG00000183850 | ZNF730
Description
zinc finger protein 730 [Source:HGNC Symbol;Acc:32470]
Coordinates
chr19:23258003-23281215:+
Coord C1 exon
chr19:23258003-23258189
Coord A exon
chr19:23278346-23278501
Coord C2 exon
chr19:23281142-23281215
Length
156 bp
Sequences
Splice sites
3' ss Seq
GACTCTCCCCCTCTTTCTAGATT
3' ss Score
10.95
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
ATTTGGCGGGGTCTTTGTCTCTCGCTCCCGCCAGAGCTTGGGATCGGTCTTCACTGTTCCGCGTCCTCTACCTGGGAACCACCGACCCCCGCCCGGCGACTTTGTCACAGACTCTGTTGCCCTGTGATCTGCAGGTCCTGGGAGACGCACAGCCAAGATGCCAGGGCACCCTGGAAGCTGTGAAGTG
Seq A exon
ATTCTGCCCTCAGAGGACATTGTGACATGTCACTGGGCCTAATACTAAGATGACATCATTCTTTAGTTTTGGCACTGCCCTCAGAAGCCGTGGTGGTGTATTGCTGGGCCCAGAGCCAATGTGATGTGAGTCTCCTGCCTGGATCCTGCCTACAAG
Seq C2 exon
GTTATGTGAATCCTCTTCTTCCCAGATCCTGCCAAAAGGAAAGATTGTGACATATCACTGGAACCAGCACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183850_MULTIEX1-3/7=C1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGCGGGGTCTTTGTCTC
R:
GTGCTGGTTCCAGTGATATGTCA
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)