HsaEX0074281 @ hg38
Exon Skipping
Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:HGNC:32469]
Coordinates
chr19:21358930-21375364:+
Coord C1 exon
chr19:21358930-21359143
Coord A exon
chr19:21361766-21361858
Coord C2 exon
chr19:21375238-21375364
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGGTTTATTTTCTCCCATAGGAC
3' ss Score
11.54
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTCCAATCAGGCACGCAGCTTGAGCGGAGAGGACGGCTTCCGGGATGTGGCGGGATTTGTCCGCTTCTTTGTCTTTGGCTGCCGCTGGAACTCCGGGTCTCGTCTTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGGTCCTGTGACCTGCAGGTATTGGGAATCCACAGCTAAGACGCCGGGACACCCTGGAAGCCTAGAAATG
Seq A exon
GACGACCTGAGGTATGGAGTGTATCCTGTCAAGGGGGCAAGTGGATACCCTGGGGCTGAGAGGAATCTTCTGGAGTACTCTTATTTTGAAAAG
Seq C2 exon
GGGCCGTTGACATTTAGGGATGTGGTCATAGAATTCTCTCAGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAAGATTTGTATAGGAAAGTGATGTTAGAGAACTTCAGAAACCTGGTGTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687_MULTIEX1-2/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PD(5.3=50.0)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTCACTGCTCTGTGTCC
R:
TTGCCACTCCTCCTGAGAGAA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development