HsaINT0188260 @ hg38
Intron Retention
Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:HGNC:32469]
Coordinates
chr19:21358930-21361858:+
Coord C1 exon
chr19:21358930-21359143
Coord A exon
chr19:21359144-21361765
Coord C2 exon
chr19:21361766-21361858
Length
2622 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGGTTTATTTTCTCCCATAGGAC
3' ss Score
11.54
Exon sequences
Seq C1 exon
GTCCAATCAGGCACGCAGCTTGAGCGGAGAGGACGGCTTCCGGGATGTGGCGGGATTTGTCCGCTTCTTTGTCTTTGGCTGCCGCTGGAACTCCGGGTCTCGTCTTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGGTCCTGTGACCTGCAGGTATTGGGAATCCACAGCTAAGACGCCGGGACACCCTGGAAGCCTAGAAATG
Seq A exon
GTGAGAGTGCGGGGTCCAACATCCCGAGAGAGGGGAAGGGCTGGTTGGAACCGGTGGGAAGTGGCTGTGGCGAGACTCAGGCCTCCCCGCAGTCAGCTCTACAATCTGCGCCCCGAGTTCTCCTTGCCCAGCTCGGCCTCAGTCGCCTTCAGCCATAAGATGGCGGTTGCGCCGACAGCCCGGCCCCCGGGCGTCCTGTCTCTTCCCTGCATAGTGACTGTGCCCTTGCCTGGAGCCCTCTCTGGGGAATCTCTGCACCCGCAGCGCCGCTTCTCTACCGGATTGTGCAGGGACCGTGGGAGGGTCGTCAGGGGAGAATCCTGACTTGGGGTGCGGGTTCATGAATGGGAAGAGGTTTGTTCCGTGGGGTTCCCAGTTCCTATTATCTCCTATTAAAAGTTAATGGGAGTCACTGCAAAAATATTAAAAGAATTTAATCAAAGAGTGGTTCTAGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGTGGGCGGATCAGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATGAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAAAAAAATTAACTTATTAAATAATTTAATCAAAAAGTGGTTCTAGAATTGTAGAGCACCAAGCTGTGGTTTTTAGTTTGTGGTCTATGGGAGAGGCTTGAAAGAAAGTCTTTTGTAAAATGCATGATGAAGAAAACCAAATTTAGTAATTGGTTAGGTACAGTTACGTGGTTTTTTAATTTGTACATTAAAGGTGAAAATTTCCTGGTTATGTAATCGGAGCTCAATTGGCAGTTTATAGTAGGTGAAGCCTCAATTTTGTTTCTCTGAATTTAGTAATTAAAAATAATGCGCCTGAGTTAGATTTTTTAAATTGAAGTAGGAACCCAGGGACTAGAGAAACCTCAGTCTAATTGCCTGCCACTTAATTATTTTCACACTCCACAGGGAACTGATTTTCTGCTGCATTTTTCACCTGGGTCCCAATCAGGGTCTTAAGTCTAACCCCCATCCCTCATTACTCCAACCTCATTCTTGCTTGCAGTAAGATACTAAATTTCCAATTTCTTCTGGGGTTCCCAAATGCCAGCTTTTCCTCCCTAATTCACATTATCACGTATTTGTGTTTTTTTGTTTGTTTTGTTTTGTTTTTGAGATGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCTCAACCTCCGCCTCCCGGTTTTAAACAATTCTCCCACTTCAGCCTCCTTAGTAGCTGGGATTACAGGTGCGCGCCATCATACCTGGCTAATTTTTGTGTTTTTGTAAAGACGGGGGTTTCACCATGCTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCATCAGCTTGCCAAAGTGCTGGAATTACAGGCGTGAGCCACCGGGCCTGGCCACTTATTTTGTAGTGTACTTTTTTATACCGTATTTTAATTAATTATTTTTTGGCAAGGCATTAAATGGTGCTTTTTTCTTTTCTTTTTTTTTTGAGACGGAGTTTCACTCTTGTTGCAAAGGCACATTCTCGGCTCACCACAACCTCCGCCTCCGGGTTCACGAGGTTCTCATGCCTCAGCCTCCCAAGTAGCTGGGTTTACAGGCATGCACCACCACGCCCAGCTGATTTTGTATTTTTAGAAGAGATAGGGTTTCTCCATGTTGGTCAGGCTGGTCATGAACTCCCGACCTCAGGTGATCCGCCCGCCTTGGCCTCCCGAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCTGCATAAATGGTGTTTTGGGGGTTTTTTTGTTTGTTTTTTGTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTACAGTGGCATGGTCTCGGCTCACCGCAACTTCTGCCTCCCGGGTTCAGGCGATTCTCCTGCCTCAGCCTCCGAGTAGCTGGGATTACAGGCATGTGCCAGCCACCACGCCCGGCTAATTTTTTATTTTTAGTAGAGACAGGGTTTCTCTATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGTGGGGATTACAGGCGTGAGCCACCACACCCAGACCAATGGTACTTTTAAGAAGGTTTGTTATCTGTTTGTAAATATTTTCCATGAAAAGAAAGCAAATAATAATCCCCTGACACTGTGTTGCAAAAAATCTCTGTGTGTCTTTTCCTTTTATCTTTCTAGGCACAGAGATGTTATCGGAATTTTTTTGGGTCAGAGTTCTGCTTTGGAAAATTTATGGGGTGATGTGTCCTCAGCCACCGTTTAGTTTTTTCCCGGTCCTGGGTTTCAGTATTATCTGGGGATAAACCGAGATATCTGCCATGGTTATGTCAGCTAGAGTGTCTAGTGGATATCAGCTTCTGGTTTATTTTCTCCCATAG
Seq C2 exon
GACGACCTGAGGTATGGAGTGTATCCTGTCAAGGGGGCAAGTGGATACCCTGGGGCTGAGAGGAATCTTCTGGAGTACTCTTATTTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687:ENST00000311015:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139001=GVQW=PD(5.3=50.0)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains