HsaINT0188260 @ hg19
Intron Retention
Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:32469]
Coordinates
chr19:21541735-21544660:+
Coord C1 exon
chr19:21541735-21541945
Coord A exon
chr19:21541946-21544567
Coord C2 exon
chr19:21544568-21544660
Length
2622 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGGTTTATTTTCTCCCATAGGAC
3' ss Score
11.54
Exon sequences
Seq C1 exon
CAATCAGGCACGCAGCTTGAGCGGAGAGGACGGCTTCCGGGATGTGGCGGGATTTGTCCGCTTCTTTGTCTTTGGCTGCCGCTGGAACTCCGGGTCTCGTCTTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGGTCCTGTGACCTGCAGGTATTGGGAATCCACAGCTAAGACGCCGGGACACCCTGGAAGCCTAGAAATG
Seq A exon
GTGAGAGTGCGGGGTCCAACATCCCGAGAGAGGGGAAGGGCTGGTTGGAACCGGTGGGAAGTGGCTGTGGCGAGACTCAGGCCTCCCCGCAGTCAGCTCTACAATCTGCGCCCCGAGTTCTCCTTGCCCAGCTCGGCCTCAGTCGCCTTCAGCCATAAGATGGCGGTTGCGCCGACAGCCCGGCCCCCGGGCGTCCTGTCTCTTCCCTGCATAGTGACTGTGCCCTTGCCTGGAGCCCTCTCTGGGGAATCTCTGCACCCGCAGCGCCGCTTCTCTACCGGATTGTGCAGGGACCGTGGGAGGGTCGTCAGGGGAGAATCCTGACTTGGGGTGCGGGTTCATGAATGGGAAGAGGTTTGTTCCGTGGGGTTCCCAGTTCCTATTATCTCCTATTAAAAGTTAATGGGAGTCACTGCAAAAATATTAAAAGAATTTAATCAAAGAGTGGTTCTAGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGTGGGCGGATCAGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATGAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTTGTCTCAAAAAAAAAATTAACTTATTAAATAATTTAATCAAAAAGTGGTTCTAGAATTGTAGAGCACCAAGCTGTGGTTTTTAGTTTGTGGTCTATGGGAGAGGCTTGAAAGAAAGTCTTTTGTAAAATGCATGATGAAGAAAACCAAATTTAGTAATTGGTTAGGTACAGTTACGTGGTTTTTTAATTTGTACATTAAAGGTGAAAATTTCCTGGTTATGTAATCGGAGCTCAATTGGCAGTTTATAGTAGGTGAAGCCTCAATTTTGTTTCTCTGAATTTAGTAATTAAAAATAATGCGCCTGAGTTAGATTTTTTAAATTGAAGTAGGAACCCAGGGACTAGAGAAACCTCAGTCTAATTGCCTGCCACTTAATTATTTTCACACTCCACAGGGAACTGATTTTCTGCTGCATTTTTCACCTGGGTCCCAATCAGGGTCTTAAGTCTAACCCCCATCCCTCATTACTCCAACCTCATTCTTGCTTGCAGTAAGATACTAAATTTCCAATTTCTTCTGGGGTTCCCAAATGCCAGCTTTTCCTCCCTAATTCACATTATCACGTATTTGTGTTTTTTTGTTTGTTTTGTTTTGTTTTTGAGATGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCTCAACCTCCGCCTCCCGGTTTTAAACAATTCTCCCACTTCAGCCTCCTTAGTAGCTGGGATTACAGGTGCGCGCCATCATACCTGGCTAATTTTTGTGTTTTTGTAAAGACGGGGGTTTCACCATGCTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCATCAGCTTGCCAAAGTGCTGGAATTACAGGCGTGAGCCACCGGGCCTGGCCACTTATTTTGTAGTGTACTTTTTTATACCGTATTTTAATTAATTATTTTTTGGCAAGGCATTAAATGGTGCTTTTTTCTTTTCTTTTTTTTTTGAGACGGAGTTTCACTCTTGTTGCAAAGGCACATTCTCGGCTCACCACAACCTCCGCCTCCGGGTTCACGAGGTTCTCATGCCTCAGCCTCCCAAGTAGCTGGGTTTACAGGCATGCACCACCACGCCCAGCTGATTTTGTATTTTTAGAAGAGATAGGGTTTCTCCATGTTGGTCAGGCTGGTCATGAACTCCCGACCTCAGGTGATCCGCCCGCCTTGGCCTCCCGAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCTGCATAAATGGTGTTTTGGGGGTTTTTTTGTTTGTTTTTTGTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTACAGTGGCATGGTCTCGGCTCACCGCAACTTCTGCCTCCCGGGTTCAGGCGATTCTCCTGCCTCAGCCTCCGAGTAGCTGGGATTACAGGCATGTGCCAGCCACCACGCCCGGCTAATTTTTTATTTTTAGTAGAGACAGGGTTTCTCTATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGTGGGGATTACAGGCGTGAGCCACCACACCCAGACCAATGGTACTTTTAAGAAGGTTTGTTATCTGTTTGTAAATATTTTCCATGAAAAGAAAGCAAATAATAATCCCCTGACACTGTGTTGCAAAAAATCTCTGTGTGTCTTTTCCTTTTATCTTTCTAGGCACAGAGATGTTATCGGAATTTTTTTGGGTCAGAGTTCTGCTTTGGAAAATTTATGGGGTGATGTGTCCTCAGCCACCGTTTAGTTTTTTCCCGGTCCTGGGTTTCAGTATTATCTGGGGATAAACCGAGATATCTGCCATGGTTATGTCAGCTAGAGTGTCTAGTGGATATCAGCTTCTGGTTTATTTTCTCCCATAG
Seq C2 exon
GACGACCTGAGGTATGGAGTGTATCCTGTCAAGGGGGCAAGTGGATACCCTGGGGCTGAGAGGAATCTTCTGGAGTACTCTTATTTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687-ZNF738:NR_027130:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF029069=Fe_hyd_lg_C=PU(26.7=38.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)