HsaEX0074317 @ hg38
Exon Skipping
Gene
ENSG00000196214 | ZNF766
Description
zinc finger protein 766 [Source:HGNC Symbol;Acc:HGNC:28063]
Coordinates
chr19:52269571-52282237:+
Coord C1 exon
chr19:52269571-52269631
Coord A exon
chr19:52277154-52277541
Coord C2 exon
chr19:52282111-52282237
Length
388 bp
Sequences
Splice sites
3' ss Seq
AGCATATTTTTGACATTCAGGAT
3' ss Score
5.49
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCGCGCAGCCGCCTGCAGACCCGGAAGTGGATGGCGTGGAGATATGGCGCAACTGCGGCGC
Seq A exon
GATTGACTTCTAAAGAGTCATGTTGGCCGGGCGCGGGGGCTCATACCTGTAATCCCGGCACTTTGGGAGGCCGAGACGGGCAGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTACGAATACAAAAAATTACCTGGGCGTGTTGGCGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGGGCCACGGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAACAAAAAAAGTCATGTTATGTGAAGGAGAAGCCCAGAAGAGGAAAGCAGAGGAGTCAGGCATGCCACTTACTCAG
Seq C2 exon
GGACACTTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTGCAGAAGGCTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196214_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.326 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development