MmuEX0053053 @ mm9
Exon Skipping
Gene
ENSMUSG00000067942 | Zfp160
Description
zinc finger protein 160 [Source:MGI Symbol;Acc:MGI:108187]
Coordinates
chr17:21145905-21157162:+
Coord C1 exon
chr17:21145905-21146072
Coord A exon
chr17:21148640-21148736
Coord C2 exon
chr17:21157036-21157162
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGTATGCTTTTGGTATTCAGGAT
3' ss Score
6.96
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAGCGACCCGGAAGCGGTTTTGCTCTGCATAAATTTTGTAGCTGGGTGAGTTTTCCCAGATTCTTTAGGCCGGTTGCTGGCACTCAGAACCCGGACCTCTGCCCTGGAGTCCCCATCTTGTGTGCAAAGCTCCACTCGGTGACGCGGAGAGCTGCGAGACTGAGGAA
Seq A exon
GATTGACTTCTAAACATTAATGTTGCACAAGGAAGAACCTGGGAGAAGGAGAAGAAAGAGGAAATAAAAAAAAAAGCCAGGGATGGCTGTCACTCAG
Seq C2 exon
GGACAGTTGTCATTCAGTGATGTAGCCATAGAGTTCTCTCAAGAGGAATGGGAATGCCTAGACCATGCACAGAGAGCTTTGCACAGGGATGTCATGTTGGAGAATTACAGCAACCTGCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067942_MULTIEX1-1/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTTAGGCCGGTTGCTGG
R:
TCTCTGTGCATGGTCTAGGCA
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: