HsaEX0074332 @ hg19
Exon Skipping
Gene
ENSG00000152439 | ZNF773
Description
zinc finger protein 773 [Source:HGNC Symbol;Acc:30487]
Coordinates
chr19:58016670-58024436:+
Coord C1 exon
chr19:58016670-58016768
Coord A exon
chr19:58019888-58019932
Coord C2 exon
chr19:58024390-58024436
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATAATTTTCACCAGTTT
3' ss Score
6.21
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACTGAGAG
Seq A exon
TTTGGCTGCGTAACAGGTCGGCAAATCTCCTCACTCAGATATTCT
Seq C2 exon
TCCCGAACCGACAGCCACAAGTGGCGCCCGAACAGGGACGTGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152439_MULTIEX2-2/2=C1-C2
Average complexity
ME(1-2[94=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.700
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCATCTTCCAAGACCCA
R:
TCACTCACGTCCCTGTTCGG
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)