HsaINT0188350 @ hg19
Intron Retention
Gene
ENSG00000152439 | ZNF773
Description
zinc finger protein 773 [Source:HGNC Symbol;Acc:30487]
Coordinates
chr19:58016670-58019510:+
Coord C1 exon
chr19:58016670-58016768
Coord A exon
chr19:58016769-58017725
Coord C2 exon
chr19:58017726-58019510
Length
957 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
CAACATTTCTCTTCTTTCAGGTA
3' ss Score
10.6
Exon sequences
Seq C1 exon
GACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACTGAGAG
Seq A exon
GTACTTGGTGGGTGGAGCTCAGGGAGGTATGAACTCGGGTATGGGTTTGTATCATACCAGGAGTCTTTCCAGTGGGCCCAGATATTTTGATACCAAGGCAAGGTGTCGTCGCTGATTTCTATCTTTTCTTCCTCAGTCACCCATTTATATCTATTCTGATAGTTGACCCAGGGCCATTCCCCACCTCTCTGTACTCCATGTTTCACCCCATCCTCAGCAGCACCTTTCAGCAGTGGCTTTCACTGAATGTGTGGTGAGGTGGGGCGCTTATTCTTGCATAGTCCTTGGACACCAACTATTTCATTCCAGTTGTTTTTTTTTTTTTTTTTTGACAGAGTCTTGCTCTGTCGCCTAGGCTGGAGGGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTATCAGGTTGATGCCATTCTCCTGCCTCAGCCTCCTAGTAGCCAGGACTACAGGCGCCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACTGGGTTTCACCATGTTAGCCTGAATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCGAAAGTGCTGGGATTACAGGCATGAGGCACCGCGCCCATCCTGCAGTTGTTTTTTTCTGGACCTGGATATAACCTTCTGTGCCGTGTTCCTGTGTCTCCAGCAGCCAAAACCCTGTGGAAAGCCATTTGCAGAGGATTGTGTTGGGGACTCTGCCTCTCCTCCTTGTGCTACACCACATCCTTGCATCCTTGGTGCTCATGAGGCCTCCCCAAATCTGTGAGCTAGCCAGGTTCAGCACTGCACAGCAGGCCCTTCCCCACCAAGCGCTAGCCCCCTCATTCTGCAAGCAGTCCCACACGCTAATTACCAGGTGTGTCAGACACGTGTGAGAGTGCTGCCTTCTCACACCAAAGACTACATTTACTTCATCAACATTTCTCTTCTTTCAG
Seq C2 exon
GTAGTTGGCAAGGAGCCAAGGCTGAGGCAGCTGCTGAGCAGAGTGCTTCTGTAGAAGTGCCCAGTTCAAACGTTCAGCAACACCAGAAGCAGCACTGTGGAGAGAAACCCTTAAAAAGACAAGAGGGCAGGGTCCCAGTTTTGAGGAGTTGCAGAGTCCACCTATCAGAGAAGTCCTTGCAAAGCAGGGAAGTTGGGAAGGATCTTCTGACCAGCTCAGGTGTTCTCAAGCACCAGGTGACTCACACGGGAGAGAAGTCACATAGGAGCTCCAAAAGTAGGGAGGCCTTTCATGCTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAGCCTTTGGTCAGAAATATTTACTTGTTCAGCACCAGAGACTGCACACTGGGGAAAAGCCTTATGAATGCAGTGAATGTGGGAAGTTATTTAGCCATAAGTCCAACCTTTTTATACACCAAATAGTTCACACTGGAGAAAGGCCTTATGGGTGTAGTGACTGTGGAAAATCCTTTAGCCGTAATGCTGACCTCATTCAACACCAGAGAGTTCACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCTTTCAGGCATAATTCCACACTTGTTCAGCATCACAGAATCCACACTGGAGTAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTGTTTAGTTTCAACTCCAGCCTCATGAAACATCAGAGAGTTCACACTGGAGAAAGACCTTATAAGTGCAGTGAATGTGGAAAATTCTATAGCCACAAGTCCAGCCTTATCAATCATTGGCGTGTTCACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAATTTTTTAGCCAAAGCTCAAGCCTCATGCAACATCGAAAAGTTCACACTGGAGAAAAACCTTTTAAGTGCAATGAATGTGGGAGATTCTTTAGTGAGAATTCCAGCCTTGTTAAACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAATTTTTTCGCCACAGCTCCAGTCTTGTTAAACATCGAAGGATTCACACTGGAGAAATACAATGATTGTGAGAAATCCTTTAGCTGGTGTTTCAACCTCATTCAACACCAGAAAGTTCACAGTGTAAAAAAGTCTTGAAGGTTACTAATGGAAATCCATTAGCTATACCTCCAAACTCATTCAACACTGGACAGTTCACAGAGTGGACAATGTAGTGAATATGGTAAAAGGCCTCAGCCAAAGGCCTAACCGTATTCAACACCAGAAAGTTTAGACTGGAGAAAGGCCTTAGACTGTCGCTGAATCAATATGACCTGACTTAAAGCAGAAACAGCCAGGCGTGGTGGCTGACACCTGTTATTCTCACCACTTTGGGAGGCTGAAGCGGGCGGATCACAAGGTCAGGACATCGAAACCATCCTGGTTAACACAATGAAACCACATCTCTACTAAAAATACAAAAATTTACTGGGCATGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATGGCATGAACCTAGGAGGCAGAGTTTGCGGTGAGCTGAGATCACGCCACTGCACTCCAGACTGGGTGACAGAGTGAGACTCTGTCTAAAAAAAAAAAAAAAAAAAATTAGCCCGGCGTGGTGGCAGGCAACTGTAGTCCCAGCTACTTGGGGGGCTGAGGCAGGAGATTTGCTTGAACCCGGGAGGCGGAGGTTGCATTGAGCCGAGATCACGCCACTGCACTCCAGCTTGGGTGACAGAGTGAGACTTCGTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152439-ZNF773:NM_198542:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF0013017=C1_1=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF0013017=C1_1=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF0013017=C1_1=WD(100=14.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATGCCTGCTTGGGAAGT
R:
TTTCCAGCATGAAAGGCCTCC
Band lengths:
345-1302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)