GgaINT0121509 @ galGal3
Intron Retention
Gene
ENSGALG00000015459 | ZFP92
Description
NA
Coordinates
chr1:95221218-95223542:-
Coord C1 exon
chr1:95223452-95223542
Coord A exon
chr1:95223012-95223451
Coord C2 exon
chr1:95221218-95223011
Length
440 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
3' ss Seq
TAGTTGTGATTTTTTTCCAGGTA
3' ss Score
7.26
Exon sequences
Seq C1 exon
GAGGATTCCTGATTGGTGAACCTGACATAACCTGCCCAGATGGACCAAGGAGAAGATCAAGATCACGAGGCCTCAAAGGAGATGCACATGA
Seq A exon
GTAAGGAATGAGTTTATACACACGGAGAAAGGAAAAAGCAATTCGAACTTTTGCATTGTTCTTCAAACTACTTTATTCCATCCAGCTTGATTTGAGACCTTCTCTTTCCCTGTCACTGCAGCCTTGTCAGTGTGCTGTTAAGAGTATGTATGAGAGATAGAATATTAAGAAGACAGAACGTGACGATTTCCCGGGGGCAAGGAAGGGCCAACTGCACTGCCCTTGGCTCTGCTTTTTGTGGTACATCTGCTCTGGGTCATGTGATGAGGTCGCATTCTCACAACTGGTTTTCCATTTGATCCCAGTCCTTCCCTGTAACTGCTTCTCCTACGCAGTGCAGACCATACTCTCTGGAAGAAGAGCTCACCTGTTCTCTGCCATGCTCGTCTCCCAGCAATAATTACAATTAGTGCTTACAATTAGTTGTGATTTTTTTCCAG
Seq C2 exon
GTACTGAGATCGATCCCTTTCTGAAACACTTTGCAAGCACAGATCAGCAGGACTTGTTGGCAGCAGGATCCCTAGGAGGAAAGGAACAGCTGGGGAAAAGCCATGGAAGTCAGCGTGGTTCCACAGAGGCACGGAGAGGTGGCCACAGGGAGGCAGAGGAGGCTAAGCAGCCTTGCTCTGCTATCAGCCTGGTGAAAAGACAAGAGAGAAGGGTGGCAGCAGCCCCACGGGGAGCCCCTCGTGCAGAGCAGCCCACCATCTGCTCCGAGTGTGGCAAGGGCTTCAGCCGGAGCATCCACCTCATCCAGCACCAGCGAATGCACACCGGGGAGCGCCCGTTCCTGTGTGGGGAGTGTGGCAAGGGCTTCAGCCAGAGCTCCCACCTCATCCAGCACCGGCGGGTCCATACTGGCCAGAAACCCTACACCTGTGCAGAGTGTGGAAAGAGCTTCAGCCAGAGCTCCAACCTCCTGAAGCACCAGCGCATCCACACCGGGCTCAAACCCTACATGTGCAGCGAGTGTGGGAAGATCTTCAGCGACAGCTCCACCTGCATCAAACACCAGCGTATGCACACAGGCGAGCGGCCCTACAAGTGCCCAGCCTGTGGGAAAAGCTTCAGCCAGCGCTCCCACCTCCTCCAGCACCAGCAGGCCCACAACGGTGTCCGGCCTTACTCTTGCGGTCAGTGTGGCAAACGCTTTGGGCAGAGCTCTGACCTCATTAACCACGCTCGTACCCACACAGGTGAGAAGCCTTACAAATGCAGCCAGTGTGGCCGGGGCTTCAGTGGCAACTCCAACCTCATCAAGCACACCCGCATCCACACGGGCGAGCAGCCGTACCACTGCGGCCAGTGCGGAGCAAGCTTTCGTTTCCAGCCCCAGCTGGTGCGCCACCAAAAGCACCATACAGAGTAGTTGGCCACGTGGACCATGGGCCGTGGACCTGGTGCTGGAAAGACAGCTGGACGCCCCGTATGGGGTGTGAACTGGGGGAAGGGACCCCTCAGGGCCTGTGCCCTTCTGGCTAAATCGGTCTGTGAGCGCTGCCTAGGCACTCAGCCTGCACTGAATGCACTAGTGCAGCTTCACTGCGTGGGGTGGCTGTTCTCAGCCCCTCTTTTGGGGATGAGGAAGGAAAGCTGCTTACCATATGGTACGTCCAAGACCAGGAGGGTGAACACAGAGACGTTCCAAGGATCAGTGCCTTCTTTTGCTATTCTTAGAGGGGTGTGATTTTTGTCCTAAAATCTATTTTCTGTATGCGTTGCCTGGATTTTGCCTTTTGTTGTAAGGCCATAGCTTAGCATGATTGCTCCCCTCAGAATCCACATCTCCCACTTGGCAGTTTTCTTGGGTTTAGGTGGTGTTAGCTATTTATTTCAAACCCCTTTGACACGGAGTTGGATGCCCCTGAGTATATGTCACAGGCCCAGCCGTCCTCTGTGCAGGCCATGTCTGTGGAACTGTATTTCTGCTGGGTTGGATGGCTGTTAAATTGACAGGTTCTCAGATGATGACGCTGTTTGACAGCTTTGTCCTCAGCAGCAATTAAGTAAATTAACATCCTTATAGGCACTTCTCTCAGATTCTTGTTTAGGCGCTTTTGTGGGTGGCACTTTACCAATGTTTTTATAATGCTTTTAGAAGTATTTAGGATGGCTTTTTTAATTGTGATCTTTAATTGACAGTTGATGAAAAGAAAGAGGATGATGTTTAAAAAATAAGCCATGTCAAACCGATTTTGTATTCAGTGTTAAGCATCCTTTCTTGCATAAAAGTTTTTAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015459:ENSGALT00000024926:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF0013017=C1_1=WD(100=22.5),PF134651=zf-H2C2_2=WD(100=8.5),PF097235=Zn-ribbon_8=WD(100=14.3),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTCAAAGGAGATGCAC
R:
CATTCGCTGGTGCTGGATGAG
Band lengths:
345-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]