RnoINT0168641 @ rn6
Intron Retention
Gene
ENSRNOG00000047061 | Zfp773-ps1
Description
zinc finger protein 773, pseudogene 1 [Source:RGD Symbol;Acc:1563793]
Coordinates
chr1:69844021-69846125:+
Coord C1 exon
chr1:69844021-69844104
Coord A exon
chr1:69844105-69845121
Coord C2 exon
chr1:69845122-69846125
Length
1017 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTTTCCGTGTTGCTGCAAAGGAG
3' ss Score
3.9
Exon sequences
Seq C1 exon
GACTTGTACCTTCTGGGACTGACATCACTCAGCTGGAGTCTTCAGGAGATCGCTTCATCCCCGCCCTGAGATTTTTGACTCCAA
Seq A exon
GTAAGTGCACGGGTATTTGGAGGGTGAAGGTTATTGGTGTGTACACTCTAGATGGGTTTATAAGAAGTATCTTTCTATTGGTTCTGCTGTTTTGGTGCCAGGGCAAAGGAATGTGGTAGAGTCCGTCTGGCTATGTTTGCCCAGTTGTCTAACAGTCATTGCTGTTATCTCTGATCCAGGGCTATCTCTCACATATGAGTCTTAAGTGTTTTGCCTGCTCCCCTGTGACATAAGTTTTCCTTAATTATGTTGTTAGTGTGTACAAGTGCCCTGAGAAGTCCTTGAAAATGGGTTCTTCAGTTATTGTATTGAATGGGCCTAGACACAGCCTTTTGCACTGTGTTGAATATCTCTGTCTCTGAGTTCTTATTGCTATGATAAATTCTGACAAAAGGCAAGTTAGAAAGGAAAAGGGTTTATTTCATCTTATATTTCATGATAAAAGTCCATCAATAAGAATGATTCAAGGCAGAAACTCAAGGCAAGAACTGAAGAAAAGGCCATGGAAGAACATCGCTTACTAGCTTGCTCCTCATGGCATGGTCAGCCAGGATCACCTTGGCCAGGGGTAGCACCACAGGAAATGAGGTGGGCTTACCCACATCAAAAATTAATCAAGAAAATGGCCCTTGATGATTATTTTATGAAGGCTTTTTATTTTCAACTGAGATTCCCTACTCTCAGATGACCCTAACGTGTGTCAAGTAGAGGGAAAAACAAAAGCAAAAAAACCCAACCCAATCGGGACAGTGCCCATCTGAGGCTCTTCAGAAAGCCATTTTCTGAGGAAGGAAGTTCAAGTCTCCAACACGCCTTCTTGTGCTGCATGGCATTCCTGTGTTGTTGCCTGACATGTTTGCTGGGACAGGGCTCTTCCTCCTTCTTCCCTGGAGTAGGCCCTTCCCATCTTGAAGTCTCTGTGAGCAGTCTTGGGTGTTGATTACTTGGGCTTGTTGCCATTTCCAAGTCTATATGTCCTTTATCATTGTTTCTCTGTGTTTCCGTGTTGCTGCAAAG
Seq C2 exon
GAGTGGAGCCTGCAAAGATACCTTGTGAGCAGACCCTTTCGACAACAGAAAGAGGGCTTAATGTGACCATGCTCCCACAGCAGGAGCTGAGCAGTGCTGAGAATCACTTACAGAGAGCAGAGCACAGACTTTCAGTTACGAAGAGAAACAGAAGTGACATATCAGAGAAGACTTTACAAAGCACAGACAATACAATGGACAGCCGCACTCTCTCAGGGCTTCTCGGGCATCATGCGACTCACAGTGATGGGGGGCAACCCAGGAGCACCAAGAAAGGAAAGGCCACTCACAGTGAGAAGAGGAATTACAAGTGCTGCTCCTACTGTGGCAAATCCTTCAACTGCAGGTCGCTGCTTATTCGACACCGGAGGATACACACTGGAGAAAAGCCTTTTAAGTGTAGCGAATGTGAGAAGTCCTTCATCCAGAAGGCTGACCTGAATCAACACTTGAAAGTTCACACTGGAGAAAAGCCCTTTAGATGCAGCAAATGTGGGAAAAAATTCAAACACAGCCGCTCCCTTGTTGGACATCAAAGACTTCACACTGGAGAGAAACCTTATAAATGCAACCAGTGTGGGGAATCGTACGTGAACAGGTCCAGCCTCATACGTCATAATCTGGTTCATACTGGAGAAAAGCCTTACAAATGCAGTGAGTGTGGAAAATTATTTAAGGAGAAATCCAGCCTCGTTTATCATGCCCGGGTGCACACTGGGGAAAGGCCTTTTGAGTGCAGTCAGTGTAAGAAGAGTTTTAAAAAAAACTCACACCTGGTGAAACACCGAAAGGTTCACAGCAGGGGAAAACCCTTTAAGTGTAATGTGTGTGGAAGATTCTTTACCATGAGGTACATCCTTGTCAAACATCAGAGATTTCACACTGCAGAAAAGCATCATGAGTGCAAGGAATGTGGGAAAGTGTTTTGCTACAGGACTGGACTTTCTAGACACCGCAAGGTTCACGCTGAAAAAAATATTGAGGACAGTGAAGATGAGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047061:ENSRNOT00000072231:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.320
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTGACATCACTCAGCT
R:
GGCCTTTCCTTTCTTGGTGCT
Band lengths:
355-1372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]