MmuINT0179845 @ mm10
Intron Retention
Gene
ENSMUSG00000063535 | Zfp773
Description
zinc finger protein 773 [Source:MGI Symbol;Acc:MGI:1923623]
Coordinates
chr7:7130675-7134250:-
Coord C1 exon
chr7:7134167-7134250
Coord A exon
chr7:7133169-7134166
Coord C2 exon
chr7:7130675-7133168
Length
998 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTTTCTGTGTTGCTGCAAAGGAG
3' ss Score
4.3
Exon sequences
Seq C1 exon
GACTTATACCTTCTGGGACTGACATCACTCAGCTGGGGTCTTCAGGAAATCGCTTCATCCCTGCCCTGAGATTTTTGACTCCAA
Seq A exon
GTAAGTGCACAGGTATTTGGAGGGTGGGGGTTGCTGATGTATACACTCTAGATGAGTTCATAAGAAGTATCTTTCTGTTGGTTCTTTGGTGCCTGGGCAAAGGATCGTGGTAAAGTCCTTTTGGCTGTTTACCCAGTTGTCTACCAGTCATTGCTATTATCTCTGATCCAGGGCTATCTCTCACCTATGAGTCTTGTATGTTTTTCCTGCTCCCCTGTGACACTGTAAAGCATAAGTTTTCCTTAATTATGTTGTTAGTGTGTACAAGTGCCCTAAGCAGTCCTTGAAAACAGGTTCTTCAGGTATTGTATTGAATGGGCTTAGACACAGCCTTCTGCACTGTGTTGAACATCTCTGATTTTGAGTTTTTATAGCTATGATAAATCATGACCAAAGGCAACTTAGAAGGGGAAAGGGTTTGTTTCCTCTTTCATTTCCTGATAAAAATCCATCAATAAGAATAATTCAAGGTAGAAACTCAAGGCAAGAACTGAAGCAGAGGCCATGGAGGAGCATTGCTTACTGCCACCCAGGATCACCCTGGCCAGGGGTGGCACCACCAGAAATGAGATGGGCTTACCTGCATCAAGCATTAATGAAGAAAATGACCCTTAATGGTTATTTTATGGAGGCTTTTTTTCAATTGAGGTTCCCTACTCTCAGATGACCCTAACGTGTGTCAAGGAGAGGGAAAAAAGCAACAACAACAACAACAAAAAACAATCAGGACAGTGTCCATTTGAGGCTCTTCAGAAAGTCGTTTTCTAAGGAAGGAAGTTCGGTCCCCAGCACTCTTCCTTGTGCTGCTTGCCTTTCCTTTGTTGTTGCCCGACATGTTTTCTGGGACAGGGCTCTTTCAGCCTCATCCCTGGAGGAGGCCCCTCCCATCTTTAAGTTTCTGTGAGAAATCTCGGGTGTTGATTGCTTGTGTTTGTTGCCACTTCAAAGTCTATATGTCCTTTATCATTGTCTCTCTGTGTTTCTGTGTTGCTGCAAAG
Seq C2 exon
GAGTGGAGCTTGCAAAGATACCTTGTGAGCAGACCCTTTCAACGACCATGCAGCAGCAGCAGCAGCAGCAGCAGCTGAGCCATGCTGAGAAACCCTTACAAAGAGCAGAATGCAGAATTTCAGTTCCGAAGAGAAACAGAAGTGACCCATCAGAAAAGACTTTACAAAGCACAGACAATACAATGGACTGCCACACTCTCTCCGGGCTTCACAGGCATCATGTGACTCACAGTGCTGTGGAGCGACCCAAGAGTACCAAGAGAGGAAAGGCCACTCCCAGTGAGAAGAGGAATTGCAAATGTTACGACTGTGGCAAATCCTTCAATTGTAAGTCTCTGCTTATTCGACACCGGAGGATACACACTGGAGAAAAGCCTTTTAAGTGTAGCGAGTGTGAGAAGTCCTTCATCCAAAAGACTGATCTGAATCAACACTTGAAAGTTCACACTGGAGAAAAGCCCTTTAGATGCAGCGAATGTGGGAAAGATTTCAAACACAACCGCTCCCTTGTTGGGCATCAAAGACTTCACACTGGAGAGAAACCTTATAAATGCAACCAGTGTGGGGAATCGTACATGAACAGGTCCAGCCTCATATGTCATTATCTGGTTCACACTGGAGAAAAGCCTTACAAGTGCGGCGAGTGTGGAAAATTATTTAAGGAGAAATCCAGCCTCGTTTACCATACCCGAGTGCACACTGGAGAAAGGCCTTTTGAGTGCAGCCAGTGTAGGAAGTGTTTTAAAAAAAACTCACACCTCGTGAAACACCAGAAAGTTCACAGCAGGGGAAGACCCTTTAAGTGTAATGTGTGTGGGAGATACTTTACCATGAGGTACAGCCTCATCAAGCATCAGAGATTTCACACTGCAGCAAAGCATCACGAGTGCAAGGAGTGTGGGAAAGTGTTTTGCTACAGGACTGGACTTTCTAGACACCGAAAGATTCACGCTGAAAAAAGTATTGAGTGTAATGAGCATGGGAAGTAGTTCCCATGATCTACCCTATCTACACAAGAGGACGTTCAATGGGCAAAAGTCAATAGTGCTTCAAATGTGGAGAACCTTCACCCACACGTCCATCCTGTTTAACCTAAGAGGCCAGAGTGCTGGGATGCATCCTGAATTCACTGATGCTGGGAAAGCCTGAGAGCAAAGTCTGTTCTTATTAGCAACACAGACACAACCCAGATAGGTTTGTGAATGCAGAGAAGGTAGAGAGAGCTCCAGTCATTGACCAAGCTTGTTGAGCCTTAGGACTGAACACGACGTTGAGCAGAGAAGTCCTGAGAGTGGCCTTTGTGAGGAAGCCAGTCATTGCAAGTTACTCATCAAAGAAGGTCACAGAGGCAAGATGAGAATTAGTGCCATCTTCTTATTCCTATGAAGTTAATGCTTTCTGGGGAATTAGCAAGAGGAAGCCGTGTTCTTGACTGCACCAGAATGGGATGCAATCTCCATGTTACTGAGTGTGAATGGGGGAGGAAGAAAGTGACCTCGGTTTAAATAAGACATATATTTGTTGCTGCTACTGCTGTTGTTTGTTTGCTTGCTTGCTTGCTTTGTTTTTTCCCTCACTGAATATTGCAGTCCGTGGGATAAATGATCATTTACTGTAAAGTCTTCATGACTATTGTGTACTTAAGTGTCACTAATTTTGTTGGGGACTAGCTCTGTGTAGCACCTTATGCCCTCTTGTAGGCATATAGCCCATATGTTTTAAGTATGTGTTGCTTTCTTGGGTATGTTTTGTCTGTGTATATGTAGATACAGTGAATATGTGCCTGATGGTTATGAAGGTCCAAAAAAGGCATTTGTTTCCTAGAACTGGAATTACAGTTGGGTATGAACCAGTATGTTTGCTGGAAATGGAACCCAGGCCCTCTGCAAGGGTGGCACTTGAACACTGTGCCCTTGCTCCAGCCCAAGTTAAGAAGTTAGCAGATTCTATTCTAAGTGGCTATGTGTTTCAGATTTCCTCCTGCAGCATATCAGATACAGGGTCCTCACATCCTCCCTGATGCTCTGTAAGCTGCGTGGAGTTCATTTGAATCACTTAGTTCATTTGAGTCATTTAGTGTGGCAGCATGTAATTGTAGTTTTAATTTGGCATTATCTTCATGTGTTATTATAAAGATTCGGTTAAATTTGTGGGTTTGTGTAGGAGCCAATATGCATGTGTGTGCACCACATGTATGTCTGGTCCCCTTTCAGGTCACAATAGCCATCAGAGTCTCTTGATTGTGTAGGGAGCCATTCTGGACTTCCTGGTCAGCAGGATGGAAGTCTGTTCCAGGTAGTAAACAAGCCCATGTTTGGTGGATGGCCCGCCCTTAATTCCTGATTGGCTGAGCAAGCCTGCCTGGTGAGGTGATGTGACCTGTGGTGATTGGTGGGGGCGTGGTTGTGGCTGGAGTGGAGAAAAACACTTGTAAACTAGAGAGGCTGGGGGGTTTGAAGTAAGTAGCTGCCTGAGTAAAAACTGCATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063535:ENSMUST00000032622:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF0009621=zf-C2H2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTGACATCACTCAGCT
R:
AGTGGCCTTTCCTCTCTTGGT
Band lengths:
346-1344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types