Special

MmuINT0179845 @ mm9

Intron Retention

Gene
Description
zinc finger protein 773 [Source:MGI Symbol;Acc:MGI:1923623]
Coordinates
chr7:7083389-7086961:-
Coord C1 exon
chr7:7086878-7086961
Coord A exon
chr7:7085880-7086877
Coord C2 exon
chr7:7083389-7085879
Length
998 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTTTCTGTGTTGCTGCAAAGGAG
3' ss Score
4.3
Exon sequences
Seq C1 exon
GACTTATACCTTCTGGGACTGACATCACTCAGCTGGGGTCTTCAGGAAATCGCTTCATCCCTGCCCTGAGATTTTTGACTCCAA
Seq A exon
GTAAGTGCACAGGTATTTGGAGGGTGGGGGTTGCTGATGTATACACTCTAGATGAGTTCATAAGAAGTATCTTTCTGTTGGTTCTTTGGTGCCTGGGCAAAGGATCGTGGTAAAGTCCTTTTGGCTGTTTACCCAGTTGTCTACCAGTCATTGCTATTATCTCTGATCCAGGGCTATCTCTCACCTATGAGTCTTGTATGTTTTTCCTGCTCCCCTGTGACACTGTAAAGCATAAGTTTTCCTTAATTATGTTGTTAGTGTGTACAAGTGCCCTAAGCAGTCCTTGAAAACAGGTTCTTCAGGTATTGTATTGAATGGGCTTAGACACAGCCTTCTGCACTGTGTTGAACATCTCTGATTTTGAGTTTTTATAGCTATGATAAATCATGACCAAAGGCAACTTAGAAGGGGAAAGGGTTTGTTTCCTCTTTCATTTCCTGATAAAAATCCATCAATAAGAATAATTCAAGGTAGAAACTCAAGGCAAGAACTGAAGCAGAGGCCATGGAGGAGCATTGCTTACTGCCACCCAGGATCACCCTGGCCAGGGGTGGCACCACCAGAAATGAGATGGGCTTACCTGCATCAAGCATTAATGAAGAAAATGACCCTTAATGGTTATTTTATGGAGGCTTTTTTTCAATTGAGGTTCCCTACTCTCAGATGACCCTAACGTGTGTCAAGGAGAGGGAAAAAAGCAACAACAACAACAACAAAAAACAATCAGGACAGTGTCCATTTGAGGCTCTTCAGAAAGTCGTTTTCTAAGGAAGGAAGTTCGGTCCCCAGCACTCTTCCTTGTGCTGCTTGCCTTTCCTTTGTTGTTGCCCGACATGTTTTCTGGGACAGGGCTCTTTCAGCCTCATCCCTGGAGGAGGCCCCTCCCATCTTTAAGTTTCTGTGAGAAATCTCGGGTGTTGATTGCTTGTGTTTGTTGCCACTTCAAAGTCTATATGTCCTTTATCATTGTCTCTCTGTGTTTCTGTGTTGCTGCAAAG
Seq C2 exon
GAGTGGAGCTTGCAAAGATACCTTGTGAGCAGACCCTTTCAACGACCATGCAGCAGCAGCAGCAGCAGCAGCAGCTGAGCCATGCTGAGAAACCCTTACAAAGAGCAGAATGCAGAATTTCAGTTCCGAAGAGAAACAGAAGTGACCCATCAGAAAAGACTTTACAAAGCACAGACAATACAATGGACTGCCACACTCTCTCCGGGCTTCACAGGCATCATGTGACTCACAGTGCTGTGGAGCGACCCAAGAGTACCAAGAGAGGAAAGGCCACTCCCAGTGAGAAGAGGAATTGCAAATGTTACGACTGTGGCAAATCCTTCAATTGTAAGTCTCTGCTTATTCGACACCGGAGGATACACACTGGAGAAAAGCCTTTTAAGTGTAGCGAGTGTGAGAAGTCCTTCATCCAAAAGACTGATCTGAATCAACACTTGAAAGTTCACACTGGAGAAAAGCCCTTTAGATGCAGCGAATGTGGGAAAGATTTCAAACACAACCGCTCCCTTGTTGGGCATCAAAGACTTCACACTGGAGAGAAACCTTATAAATGCAACCAGTGTGGGGAATCGTACATGAACAGGTCCAGCCTCATATGTCATTATCTGGTTCACACTGGAGAAAAGCCTTACAAGTGCGGCGAGTGTGGAAAATTATTTAAGGAGAAATCCAGCCTCGTTTACCATACCCGAGTGCACACTGGAGAAAGGCCTTTTGAGTGCAGCCAGTGTAGGAAGTGTTTTAAAAAAAACTCACACCTCGTGAAACACCAGAAAGTTCACAGCAGGGGAAGACCCTTTAAGTGTAATGTGTGTGGGAGATACTTTACCATGAGGTACAGCCTCATCAAGCATCAGAGATTTCACACTGCAGCAAAGCATCACGAGTGCAAGGAGTGTGGGAAAGTGTTTTGCTACAGGACTGGACTTTCTAGACACCGAAAGATTCACGCTGAAAAAAGTATTGAGTGTAATGAGCATGGGAAGTAGTTCCCATGATCTACCCTATCTACACAAGAGGACGTTCAATGGGCAAAAGTCAATAGTGCTTCAAATGTGGAGAACCTTCACCCACACGTCCATCCTGTTTAACCTAAGAGGCCAGAGTGCTGGGATGCATCCTGAATTCACTGATGCTGGGAAAGCCTGAGAGCAAAGTCTGTTCTTATTAGCAACACAGACACAACCCAGATAGGTTTGTGAATGCAGAGAAGGTAGAGAGAGCTCCAGTCATTGACCAAGCTTGTTGAGCCTTAGGACTGAACACGACGTTGAGCAGAGAAGTCCTGAGAGTGGCCTTTGTGAGGAAGCCAGTCATTGCAAGTTACTCATCAAAGAAGGTCACAGAGGCAAGATGAGAATTAGTGCCATCTTCTTATTCCTATGAAGTTAATGCTTTCTGGGGAATTAGCAAGAGGAAGCCGTGTTCTTGACTGCACCAGAATGGGATGCAATCTCCATGTTACTGAGTGTGAATGGGGGAGGAAGAAAGTGACCTCGGTTTAAATAAGACATATATTTGTTGCTGCTACTGCTGTTGTTTGTTTGCTTGCTTGCTTGCTTTGTTTTTTCCCTCACTGAATATTGCAGTCCGTGGGATAAATGATCATTTACTGTAAAGTCTTCATGACTATTGTGTACTTAAGTGTCACTAATTTTGTTGGGGACTAGCTCTGTGTAGCACCTTATGCCCTCTTGTAGGCATATAGCCCATATGTTTTAAGTATGTGTTGCTTTCTTGGGTATGTTTTGTCTGTGTATATGTAGATACAGTGAATATGTGCCTGATGGTTATGAAGGTCCAAAAAAGGCATTTGTTTCCTAGAACTGGAATTACAGTTGGGTATGAACCAGTATGTTTGCTGGAAATGGAACCCAGGCCCTCTGCAAGGGTGGCACTTGAACACTGTGCCCTTGCTCCAGCCCAAGTTAAGAAGTTAGCAGATTCTATTCTAAGTGGCTATGTGTTTCAGATTTCCTCCTGCAGCATATCAGATACAGGGTCCTCACATCCTCCCTGATGCTCTGTAAGCTGCGTGGAGTTCATTTGAATCACTTAGTTCATTTGAGTCATTTAGTGTGGCAGCATGTAATTGTAGTTTTAATTTGGCATTATCTTCATGTGTTATTATAAAGATTCGGTTAAATTTGTGGGTTTGTGTAGGAGCCAATATGCATGTGTGTGCACCACATGTATGTCTGGTCCCCTTTCAGGTCACAATAGCCATCAGAGTCTCTTGATTGTGTAGGGAGCCATTCTGGACTTCCTGGTCAGCAGGATGGAAGTCTGTTCCAGGTAGTAAACAAGCCCATGTTTGGTGGATGGCCCGCCCTTAATTCCTGATTGGCTGAGCAAGCCTGCCTGGTGAGGTGATGTGACCTGTGGTGATTGGTGGGGGCGTGGTTGTGGCTGGAGTGGAGAAAAACACTTGTAAACTAGAGAGGCTGGGGGGTTTGAAGTAAGTAGCTGCCTGAGTAAAAACTGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063535-Zfp773:NM_029584:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):

C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF0009621=zf-C2H2=WD(100=7.0),PF0009621=zf-C2H2=WD(100=7.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTGACATCACTCAGCT
R:
AGTGGCCTTTCCTCTCTTGGT
Band lengths:
346-1344
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types