RnoINT0168764 @ rn6
Intron Retention
Gene
ENSRNOG00000022742 | Zfp954
Description
zinc finger protein 954 [Source:RGD Symbol;Acc:1561308]
Coordinates
chr1:69857399-69859391:+
Coord C1 exon
chr1:69857399-69857497
Coord A exon
chr1:69857498-69857920
Coord C2 exon
chr1:69857921-69859391
Length
423 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
CAGTATTTCTCTGTGTTCAGGTT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GACTTGAACTTTCTGGGATTCAGGATTTGACTCAGGCGGAGTCTTGTGGAGATCTCTCTGTGCCGGCACTGAGGTTCTTGACTCCATGTTTATGGACAG
Seq A exon
GTATATTTTGTTCCCATGCAACGTTTCAAAACACAGGCTCTCCTCTCTTGTGTTAGTGTGCAGTGTACCCAGGGCAGTCCTTGAGTGCAAGTTCCTCAGTTACCATGTCTTACTGGCCTAGACAGTCTTCTGCACTGTGTTCTGCATCTCCAGCATGGGAGGCTTGCAGAAAGCTATTGGTGAGGAATATGTTATGGTTCCTAGCATTCCCTGTGATTCACTCCATGCTTGTGTTTTTGCTGCTCCTAAGGCCCCTAGAACATATGATCTTGACAAATTCAGCATGGTAACAGGCCCTGTCTACTCTGAACTCGCCCTTTGTTCTGTGAGAAATCTCAGATCACCATTAGTTAAACAGGTGCTATCTGTCTGTCTATCACTCGACAGCCTATGTGCCACTCATCAGTATTTCTCTGTGTTCAG
Seq C2 exon
GTTGTTGGATCAAAGTGGAGAGCGAGTCCCCTATTGAGCAGAGTCTGTCTGCAGAAGGAGGTGTTAGTTTATCCACACTGCAACAGCAAATGCTGTGCTGTGCTGAGACACCCTTGCTAAGCACGGACAATGTGACGATCCTTCAGACCTCCTCCAGTCTTCTCAGGCATCAGGTGACTTCCAGTGGTAGGGACGCCCCAACGAACACTGAGAGCGGAGAGGCCATTCAGAACGAGAAGAAGAACTGCAAATGCACTTACTGTGGCAAGATCTTTACCAGTATATCCCACCTCAATCGGCACTGGAAGATACACACAGGAGAAAAGCCTTTCCAGTGCAGCGAGTGCGGGAAGTCCTTCAGCCAAAAGGCCTTTCTCATTAAGCATTTCAGAATGCACACCGGAGAGAAGCCTTACAGGTGCGGCGAGTGTGGCAAAGCCTTCAAGCATAATATCTCCCTTATTTCTCATCAGGGACTCCACACAGGAGAAATGCCTTTTAAGTGCACTGAATGTGGGAAATCATACAGGAGCAGAGAAGGCCTTAAGGTCCATTATCGGTTTCACACTGGTGAAATGCCCTTTGAGTGTAGTGAATGTGGCAAGTCGTACAGGAGCAGAGAGGGCCTTCTGAATCATTTCTACAGTCATACTGCAGAGAAGCCTTTCAGCTGCGGTGAATGTGGCATGTATTTCACCCAAAACTCCGAGCTCATTGAACATCTAACGGTTCACGGCAAGCCTTTCAAGTGCAATGAGTGTGGGCGAGTCTTTAATTCCAGTTACAACTTTGTTAGACACATGAAAGTGCATGTTGTAGCAAAGCAGTATGCATGCAGGGAGTGTGACAAAGTGTACTGCAGCAGCTCTAGCCTGTACAAACACCGGAAGATTCATGCGAGATAGACCACTCAGGAGAGCTCTAAGGGTACGACGTCCTTTGGCCATCTCCGTGAACACTTGAAATCTCTGCGAGAAAAAAGAAGTGTTAAACGCTTCAAAGCAAAGGAGGGCATCATCTACCCACACCTCCAGCCCAGAAAAGTGAAGTTGTCACCGGACTTAGGCTGCAGTGTGAACCCTTGGATTCTGGGATAGGCTCTGAGCAGAGCAAAAGTGTTTTCTGAACAACAGGCACACCCCACATTGGTCTCTGGGTGTGGAGATTGTAGGGAGTAGCTTCAGCCACTGGCAAACCTTCAGCCCTAGGACTGAACCTGACCTTAGAGAAGTTCCGAGAATGGCTTTTGTGAGACACAGTCATTGGAACTTCTTCCTGGAGTAGGTACATCAGGACATGAGGACTATTGTCATCTTTCTGTTCCCAAGGAGCTGATGCCAGGGAGCTAAGTGAGATGGCAGAGTTTCTGATTTTGGATGGCGTAGGAACAGAGTGGTTTAATAATGAGACATGACTGCTCTTTTTGCTGAGTGTTGCAGTGCCCTGAAATAAATGTGTTTTTCTTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022742:ENSRNOT00000042086:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF0009621=zf-C2H2=WD(100=7.6),PF0009621=zf-C2H2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACTGAGGTTCTTGACTC
R:
CTTCCAGTGCCGATTGAGGTG
Band lengths:
344-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]