MmuINT0005328 @ mm10
Intron Retention
Gene
ENSMUSG00000062116 | Zfp954
Description
zinc finger protein 954 [Source:MGI Symbol;Acc:MGI:1917764]
Coordinates
chr7:7114690-7116711:-
Coord C1 exon
chr7:7116613-7116711
Coord A exon
chr7:7116201-7116612
Coord C2 exon
chr7:7114690-7116200
Length
412 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
CAGTATTTCTCTGTATTCAGGTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GACTTGAACTTTCTGGGATTCATGATTCAACTCAGGTGGAATCTTGTGGAGATCTCTCTGTGCCTGCACTAAGATTCCTGACTCCGTGTTTATGGACAG
Seq A exon
GTACATTTTGTCTGTTTCTTTTGCAACGTTTTGAAACACAGGCTTTCCTCTATTGTGTTAGTGTGCACTCTACCCAGGGCAGTCCTTGAGTGCAGGCTCTTCAGTTACCATGTCTTAGGGGGCTAGACAGTGTTCTGCACCGTGTCCTGCATCTCCAGCAGCTGAGGCTTGCAGAAAGTTATTGGTGAGGAGTGTGTTACAGTTCCTAGCATGCCTCCCTGTGATTCTCGCTGCCCCTAAGTTCTCTAGACCTATGAACTTGAAAAATTCAGCATGGTAACTGGCCCTATCCACCCTGAACTAGACCCTTTGTTCCATGAGAAATCCCAGATCACCATTAGTATTAGGTAGTATCTGTCTGTCTGTCATTCAGCAGTCTATATGCCACTCATCAGTATTTCTCTGTATTCAG
Seq C2 exon
GTTGTTGGATCAAAGTGGAGAGTGAAACACCCCCCTTTAATCAAAGCCTGTCCACAGAAGGAGGTGTCAGTCCGTCCACACTGCAACAGCACATGCTGTGCTGTGCTGAGACACCCGTGCTAAGCACGGACAATGTGACGATCCTCCAGACCTCCTCGGGCCTTCTCAGGCATCAGGTGACTTCCAGTGGTGGGGACACCCCCACGAACACTGAGAGTGGAGAGGCCATTCAGAGTGAGAAGAAGAACTGCAAATGCACTTACTGTGGCAAGATCTTTACCAGTATATCCCACCTCAATCGGCACTGGAAGATACACACTGGGGAAAAGCCTTTTCAGTGCACCGAGTGTGGCAAGTCCTTCAGCCAAAAAGCCTTTCTCATTAAGCATTTCAGAATGCACACCGGAGAGAAACCTTATAGGTGCAGTGAGTGTGGCAAAGCCTTCAAGCATAATATCTCCCTTATTTCTCATCAGGGACTCCACACAGGAGAGATGCCTTTTAAGTGCACTGAATGTGGGAAATCGTACAGGAGCAAAGAAGGCCTTAAGGTCCATTATCGATTTCATACTGGTGAAATGCCCTTTGAGTGTAGTGAATGTGGCAAATCGTACAGGAGCAGAGAGGGCCTTCTGAATCATTTCTACAGTCATACCGCGGAGAAGCCTTTCAGCTGCGGTGAATGTGGCATGTATTTCACCCAGAACTCCGAGCTCATTGAACATCTAACAGTTCACGGCAAGCCTTTCAAGTGCAACGAGTGTGGACGAGTCTTCAATTCCAGCTACAACTTCATTAGACACATGAAAGTGCACGTTGTAGCAAAGCAGTATGCGTGCAGGGAGTGTGACAAGGTGTACTGCAGTAGCTCTAGCCTGTACAAACACCGGAAGATTCACGCTCGATAAACCCATAGGAGAGCCATGAGGGGAAGAGGTCCCTTATTCATCTCCATGAACACCTGAAATCTCAGCAGGAGGAAAAAAGAAGTGTCTAACGCTTCAAAGCAAGCGTGGGCATCATCCAGCCACACCTCTAGCCCATAAAAGCAGAGCGGTCACTGGACTAGGATGCATCCCTTGGATCCTGGGATAGGCTCTGATCGGACCATAAGTGTTTTCTGAAAACAACACGCACACCCTGCATAGGTCTCTGGGTGCAGAGTTTGTAGAGAGCAGCTTCAGCCGCTGGCAAACCTTCAGCCCTAGGGTTGAACCTGACCTTAAGGAGAAGTTCTGAGAGTGGCCTTTGTGAGACACAGCTACTGAAGCTTCCTGCTCTAGTAGGTATACTGGAACATGATGAGGACTGCTGTCATCTTTCTGTTACCCAGGAGTTGACACCAGGGAGCTCCGGGAGACTGAGCTCTGTGTTCTTGACTTCACAGAGTGCAGTTTCCATGCTGCTGAGTTTGGATGACGGGGGAACGGAGTGGTTTAATAATGAGACATGAATTCTCTTTTTACTAAGTGTTGCAGTGCCCTGAATAAATGTGTTTTCCTTCTCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062116:ENSMUST00000056246:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF0009621=zf-C2H2=WD(100=7.6),PF0009621=zf-C2H2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTCTCTGTGCCTGCACT
R:
AGTGCCGATTGAGGTGGGATA
Band lengths:
356-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types