BtaINT0166069 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040358 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr18:64856654-64858573:-
Coord C1 exon
chr18:64858451-64858573
Coord A exon
chr18:64857802-64858450
Coord C2 exon
chr18:64856654-64857801
Length
649 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGCATTTGTCTGCTTTCAGGTT
3' ss Score
8.88
Exon sequences
Seq C1 exon
GATATGCATCTTCCATGTCCCATGGGGTTTCCCCACAGGAGCTGGGCAGGGAGCCCTGGGTCTCTGACTGGGCCAACACAATTCCAGCCCTGACCAGAGAGGCTCAGAGTGCAGGTAGCCCTG
Seq A exon
GTGAGTGGGAGCTGGGGAAAGTGTGATGTCAGGCTGGGTTCTGGTCACTCTCCAGCCTCTCAGTGCCCACAGTGGTTTAAGTGCCAAGGCCACTGCCCACACCTCATTCCTGTCTTTACTGCCCTGTTTACCCACTTACCTTTTATGCTGTGACCTTTGGCCTTTGGCAGTTCATCACCTCTGCCCACATCTCAGCTGTTCCTCTCCACTGCTTCCTCTGTACTGCTCTCCAACACTGGCTTATATGCTGTGTGTGTCATGAGAGGTGCACATCCTTCAGATAATTCTTAAGTACCAGCTATTCTATTCATTTGTAGCTGTTTAGTAAACACACTCTTCTGCATGTCTCCCCAGCCGCCAAGGCCTTCCTACAGTGCATTTGTGGATAATTTCATTGGGGACCCTGGCTCTTTCTGGGCTGTTCATCAGATCATCAGATCATCAGATCAGTCCTCTCCCCATCAAAGCCACTTCCAACCTGTGACCTTTAGATGCCAAAGACTGTGGAGCAGCCCTTTACTCAACTTGCACCCTGACCTTTTGTCCTGATGGCAGACCTCAGTCTTAGTTTTGATAAACGCACATTTGTAATAACTGCCCCTTCCCACCAGTGTCACTGTGTACTTTACCAGCATTTGTCTGCTTTCAG
Seq C2 exon
GTTGTTGGCATGGAATGGAGGACGATGAGATCCGTTTTGAGCAGAGCATTTCTATAAAAAGAGTGTCTAAGGGCATGATTCCTAAGACGATTCCGTCTTCCCAGAAGGCTCACCCCTGTGAGACATGTGGCCCGATCTTGAGAGATGTTCTGCACATGGCTGAGCACCAGGAAACACGTCCTGGGCAGAAACCATACTTGTGTGTAGCATGTGGGAAACAGCTGTGGTTCAGTGCAAACTTCCCCCTCCACAATCAGCACAGTGGAGAGAAACCCCACAGGAGGGACGTGCACAGGGCCCTTCTTGTGAGCAGCTGCCCTGTCCAGTCGTCAGAGACACCTTTTACCACCGGGGAGGGTTGTGAGGACTTCCCAACCAGCTCAAGCATGTTTCAGCAGCATTACCCTCTTAGCAAGTGGAAGCCACAGAGTGACACCCACTGTGCAGAGGTCTTTCACAGTGGACAGAAGCATTATGAGTGCAGCGAATGTGGGAAGGCCTTCAGCCGCAAAGACTCACTTGTTCAGCACCAGAGAGTCCACACTGGAGAGAGGCCTTACAAGTGCAGCGAATGTGGGAAAACCTTTAGCCGCAAACCCATACTTGCACAGCACCAGAGGATCCACACTGGAGAAATGCCTTATGAGTGTGGCATATGTGGGAAAGTTTTTAATCATAGCTCTAATCTCATTGTACACCAGAGAGTCCACACTGGAGCACGGCCTTACAAGTGCAGCGAATGTGGGAAAGCCTACAGTCACAAATCCACGCTTGTTCAGCACGAGAGTATCCACACCGGAGAAAGACCTTATGAGTGCAGCGAATGTGGGAAATACTTTGGCCACAAATACAGACTCATTAAGCACTGGAGTGTTCATACCGGGGCACGGCCTTATGAGTGCATTGCATGTGGGAAGTTTTTCAGCCAAAGCTCCGATCTTATTGCCCACCAGAGAGTTCACAATGGTGAGAAGCCGTATGTGTGCAGTGAGTGTGGAAAAGCCTTTAGCCACAAACATGTGCTTATGCAGCACCTTAGAATCCACACTGGAGAAAGGCCGTATAAATGCAGTGAGTGTGGGAAAGCCTTCAGGCAAAGGGCTTCCCTCATCAGACATTGGAAGGTTCATGCTGGAGAAAGGCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040358:ENSBTAT00000064597:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF127602=Zn_Tnp_IS1595=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGGCCAACACAATTCC
R:
CTCCTGTGGGGTTTCTCTCCA
Band lengths:
342-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development