HsaINT0188346 @ hg38
Intron Retention
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr19:57469586-57475146:-
Coord C1 exon
chr19:57475024-57475146
Coord A exon
chr19:57474422-57475023
Coord C2 exon
chr19:57469586-57474421
Length
602 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGCATTTCTCTGCTTTCAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GACATACATCTTTCATGTCCCACATAGTTGCCTCACTGGTGATGGGTAGTGAGCCCTGGGTACCTGACTGGGTGGACATGACCCTAGCTGTTGCCACAGAGACTCCAGGTGGGAGTGACCCTG
Seq A exon
GTGAGTAGGAGCTGGGGAAAGGTGTGATGTCAGGGCTGGGTTCATATCATTCCATAGCCTCTTTGTGCCTACAGTTGTATTAGTGCTAAGGCCACTGGCCTTTCATACTCTGGCCTTTGGCCTCTGGATGTTCCATACCTCTGCCTTCATGTCTCACCTGTTCCTCTCCATGGCTTGTTCTACAGTGCCTTCCAGCATTGGCCTGTACTTAGTGTTTCATGAGATGTGTAGCCCAAATAGTCCTTAAACACCAACTACTGAGTAGCAATTTGATTTTCTTTGGTATGGACCATAACCTTCTGCACAACTCTCACCTGTCCCCAGCAGCCAAGAAAATCTGATTGTGAATGACTTTGAGACCTGCCTCTTTTTTGTGCTGTACCCCACATCTTTGTCCTCTCCCAGTTGAGGCCTTCTCCATTCTATGACATTTAGATGCCAACTACCGTATAGTACACATTTGCTGAACTTGAGTTTGGACCCTTGTCCTAACAACAGTCCTATGACCTTGGTCTTAGTTGTGTTAGACACATATTTGTAGTGAGGCTTCCCCTCTTCCACCTGTGTCAATTTGTACTTCACCAGCATTTCTCTGCTTTCAG
Seq C2 exon
GTTGTTGGCATGGAATGGAGGATGAAGAGATACCTTTTGAGCAGAGCTTTTCTATAGGAATGTCACAGATCAGGATTCCCAAGGGAGGTCCTTCTACTCAGAAGGCTTACCCCTGTGGGACATGTGGCCTGGTCTTAAAAGACATTTTGCACTTGGCTGAGCACCAGGAAACACACCCAGGGCAGAAACCATACATGTGTGTGCTGTGTGGGAAACAGTTCTGCTTCAGTGCAAACCTTCACCAGCACCAGAAGCAGCACAGTGGAGAGAAACCCTTTAGAAGTGATAAGAGCAGGCCCTTTCTTCTGAACAACTGTGCTGTGCAATCAATGGAGATGTCTTTTGTGACAGGGGAGGCTTGTAAGGACTTCCTAGCCAGCTCAAGCATTTTCGAGCACCATGCCCCTCACAATGAGTGGAAGCCACACAGCAACACCAAGTGTGAGGAGGCCTCTCACTGTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAACCTTCAGCCGCAAAGACTCACTTGTTCAACACCAGAGAGTCCACACTGGAGAAAGGCCTTATGAGTGCGGTGAATGTGGGAAAACCTTTAGCCGCAAACCCATACTTGCTCAGCACCAGAGAATCCACACTGGAGAAATGCCTTATGAGTGTGGCATATGTGGGAAAGTTTTTAATCATAGCTCTAACCTTATTGTACATCAAAGAGTACACACTGGAGCAAGGCCTTACAAGTGCAGTGAATGTGGGAAAGCCTATAGTCACAAATCTACACTTGTTCAGCATGAGAGTATCCATACTGGAGAAAGGCCATATGAGTGCAGCGAATGTGGAAAATACTTTGGTCACAAATACAGACTCATTAAACATTGGAGTGTTCATACTGGAGCAAGGCCTTATGAGTGCATCGCATGTGGGAAGTTCTTTAGCCAAAGCTCTGACCTTATTGCACATCAAAGAGTTCATAATGGTGAAAAGCCTTATGTGTGCAGTGAATGTGGAAAAGCCTTTAGCCACAAACATGTACTTGTTCAGCATCATAGAATTCACACTGGAGAAAGGCCATATAAGTGCAGTGAATGTGGGAAGGCCTTCAGGCAGAGGGCTTCCCTCATCCGCCACTGGAAAATTCACACTGGAGAAAGGCCTTAGGATGGGAGATAATTCCGTTTCCTTGTTCAACATAATAACTGACATCAGAGAGAAGCTCCAAGCATAGCCTTTATGTGTAGCCGACAGCCAGAAGTAGAACTTTATACACTCAAACACTCACCCTGGGGAGGTTCTTCCGAGTGCCAGCTATATGGGAAGCCTTCTGGAGCTATGCTGAATTTTCTAGACTCTTGCTGGAATTTCGTCAAGGCAGTGCCTGTTAGAAGCCATCTGTCTTTGTGCTGGAAGAGTCCTGCCTTGTGCCAAAGTAACCCCAATGTGTTTCAAAAGACAGACCTCTGTACTATTCCCTTCCCTGGAGGGAATCATCAGTAGCCTGAGGCCATCAAGGATTCTCACTTTTTTTCTGCCCCACTACTGGTTTAAGCATGAGCATGACCCAGTTTTAGCCAGAAAAATGGGAGCTTTGTTCTGCTGACCACTGGCAGAGGTTTCCCTTCATGGATATAGTTGATCTCACATGGCACTTGGGACGAATTTTTCTAGCCTTCAAGACACCTGACCTGAAATTGGCTGCCTCATATTCTGGTTTTGCAACAAATGCCTTAATTTTTAGACTATCTGAAATCTTGAGGATTCTGTTCGCTTTGTGGGTTGGGTTGAGAACAGAATTGAGCTAAGCCAGTATGAAGGGAAGAACAGCTTTTGTGAGAGCTCCAACTATCTGTATCTCTGAAGTGATAGTAGGATGGCAAAGACTAGCTCTTATGCTAGTGTCAAGCTAACTTACTTGACTGCTTCAGCTCTCCTAGGAAAGAATGCCAGTCTTTGTAGGCCTAATCTTTTGGTCTATATGTTAAGATTTTTTGTGTAATTGAGGTCACCCTAAGCAGTGGGCATTTGTTGTGATAATCTCTAATGTGTCTGGGAGCAACATGAATTACGTCCCTTGTTCCCAGAAGATACTTCATATTCCCAAGGCTTCTTGAGGAGAATTTGAACTCAGTGGACATGTCAAGATCTCTGAAGTCTATTTTTCAGTAGGCAGTTGATATTGGCTGTCCTCCAGAAGGCCCAGGTAGGAATCATAGTTGGTGCAGAAACCCAGATTAATAAAGGAATGAGAAAACTGCAGCAAACTATAGGGAATATGACCCTTCTAAAGGTACATCCACATGTGTTTCCATTACTCTGGCTCCATTATGAGGGTTTACAGAAATATTTCCATACCTGTGTCTCTTATGGCTAAGGTTACTGTCCAGAAGTCAGTCTAAACATTTTTGCAATAAACTGCACATATTTATAGTGTACCATTTGATAAGTTTTGATACATGTTGGCACTTCTCAAACCAAAAGTTTCCTGATTCCTTTTATATTTTCTCCCTTTCCTTCACCCATCCCCAGGCAACTATTGATCCGTTGTCACTGTAGATTTGTTTGTATTTCCTAGAATTCTACAGAGATAGAGTAATTTAATATGTATTCTAATGTTTTTGGCTTCTTAAACTCTGAAATTAAGGCTCATGGTGGTGTTCTGTGTTTCATAGTTCATTTCTTTTCATTTGTACTTTGCTAAGAGTGTTCCATTGTAGAGAAATAGTTTCAAAGCAAGTGATCCAGGAGAGAACTCACACAAGAACAAAGCCACAGTATCTGTCATTACCTTAAACTGAAAGTGATGAGCCGTCATTTCTGCTATATTTCATAAGTAACCCTAGCTAATCCTGGTTAAAAGTGGAAGAGAACTACACAAAGGTGAAAATAGGGATTTGTGGGGCGTTTTCTTGGACTCTGGTGACCATAATCCTATATGGTTTTTTTCTTTTTCTGTTTTAGTTGTTTAATATGAATTACATTGACTGATTTTTTTAAATGTTAAGCCAACCTTGCATTTCTGTAATAATTCCCATTTGGTCATGATGTATTAGTCATTTAGTATATTGTTGAATTTGATTTGCTATTTTGTTTTGTTTTGTTTTGTTTTTTTGTAACAAGTTTTGCACCAATGTTCACGAGTGATATTTGTCCCTAACTTTCTTTCTTGCTTGCTTGCTTTTTTTTCTTTGTAATTTTATATCTTGCCCAGGTTTGGCTTTGGTATCAGCATAATGCCAGCTTTATAGAGTAAGTTGGGAAGTATTCCTGCTCTTCAGCTCTCTGGAAGAGTTTGTGAATAATTGGTATTATTTCTTCCTTAAATGTTTGGTAGAATTCACCAAGGAAGCTGTCTGGGCCTGGAGTTTGTTTTGTAGGAAAGTTTCTAACTATAAGTTTGATTTCTGTGGTAGATAGAGGGCTGTACAAGTTATATGTACATCTGTCTGTGTGTGTGTTGTCTGTCTGTCACTCTGGCCCTGAAGTGTGTTTTGTAGGACAGCATCTAACTACAAGTTTGATTTCCATGGTAGATGGAGGGCTATACTAGTTATATATACATCTGTCTGTCCGTCCATCTGTTTGTCACTCCATCCATCCATCTATCTCTAGAGTGAGCTTTGATGGTTTGTGTCTTTCAAGGAGTTTTTCTGTTTTATTTAAGTACTCAAATTTTTCAAAATATTATTTTCATACTTGTAGAATTTGTAGTGGTGCAACCTCTTCTATTCCTGATACTGGTAATGTCTATATTTTTCTTTTAACCTTGATTGGTTTGGGTAGAGATTTATCAATTTTACAATTTTATTGATCTTAAAGTACTTGGTATTATTGAATTTTCTGTTTTCTGATATTTTGGGATTTTTCTTTTCCATTTTGAGTTTTACTAATGCCTTCCGCTTTTATTGGATTTCATTTCTTTTGCTACTTTTTAACATGGAAGCTGAGGTCCTTCATTTCAAACCTTTGGGTTTTTTTCCCCTAATATGGGGAAGAGATGTTAATGTTAAAAATCTATCTGAGAACTGCTTTAATTACCTCCCATCAAGCTTGATGTGGTTTCATTTTTTTTTTTGAGACAGTGTCTTGCTCTGTCATCCAGGTTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTTGGACTACAGGCGCCTGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGATCTTGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCAGCCGATGTGGTTTCATTTTAGTTGAGTTTAGGATGTTTTCCAGTTAAAAAAATTCTTCTTGACACATGGCTCTTTTTAAATGTATGTTATTTAATTCCTAAATATTTGGGGATTTTGCTTATCTTTCTGGTAGTTTCTGCAATAATTCCATTGTGGTCAGAGTACATTAAGACTTGAATTATTTACATTTATTGAGATTTGCTTTGTGGCCCAGAATATGGGCTATCTTGGTATGAGTTACATGTTCACTTGAAATGTATACTGTACTCTCGTTTGATGAAGGGGTTCTACAAGTGTTGATTAGGTAAAAATGGTTGATGTTATTTAAGTTTTTTCTATCTTTATTGACATTCTGTGGTTTTGGTTCCAGCAATTATTTTAAGAGGATTGTTGACATCTCTGAATATTAAATTGGATTTACTTCTCTGCAGTTCTGTCAGATTTTGCTTCACATATTTTAGTATGTTTTTATTAGGTGAATAATAAATATTTCCTATTTTATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128:ENST00000343280:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0214814=zf-UBP=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGACCCTAGCTGTTGCC
R:
TCAGAAGAAAGGGCCTGCTCT
Band lengths:
358-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains