HsaINT0188346 @ hg19
Intron Retention
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:33106]
Coordinates
chr19:57980954-57986514:-
Coord C1 exon
chr19:57986392-57986514
Coord A exon
chr19:57985790-57986391
Coord C2 exon
chr19:57980954-57985789
Length
602 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGCATTTCTCTGCTTTCAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GACATACATCTTTCATGTCCCACATAGTTGCCTCACTGGTGATGGGTAGTGAGCCCTGGGTACCTGACTGGGTGGACATGACCCTAGCTGTTGCCACAGAGACTCCAGGTGGGAGTGACCCTG
Seq A exon
GTGAGTAGGAGCTGGGGAAAGGTGTGATGTCAGGGCTGGGTTCATATCATTCCATAGCCTCTTTGTGCCTACAGTTGTATTAGTGCTAAGGCCACTGGCCTTTCATACTCTGGCCTTTGGCCTCTGGATGTTCCATACCTCTGCCTTCATGTCTCACCTGTTCCTCTCCATGGCTTGTTCTACAGTGCCTTCCAGCATTGGCCTGTACTTAGTGTTTCATGAGATGTGTAGCCCAAATAGTCCTTAAACACCAACTACTGAGTAGCAATTTGATTTTCTTTGGTATGGACCATAACCTTCTGCACAACTCTCACCTGTCCCCAGCAGCCAAGAAAATCTGATTGTGAATGACTTTGAGACCTGCCTCTTTTTTGTGCTGTACCCCACATCTTTGTCCTCTCCCAGTTGAGGCCTTCTCCATTCTATGACATTTAGATGCCAACTACCGTATAGTACACATTTGCTGAACTTGAGTTTGGACCCTTGTCCTAACAACAGTCCTATGACCTTGGTCTTAGTTGTGTTAGACACATATTTGTAGTGAGGCTTCCCCTCTTCCACCTGTGTCAATTTGTACTTCACCAGCATTTCTCTGCTTTCAG
Seq C2 exon
GTTGTTGGCATGGAATGGAGGATGAAGAGATACCTTTTGAGCAGAGCTTTTCTATAGGAATGTCACAGATCAGGATTCCCAAGGGAGGTCCTTCTACTCAGAAGGCTTACCCCTGTGGGACATGTGGCCTGGTCTTAAAAGACATTTTGCACTTGGCTGAGCACCAGGAAACACACCCAGGGCAGAAACCATACATGTGTGTGCTGTGTGGGAAACAGTTCTGCTTCAGTGCAAACCTTCACCAGCACCAGAAGCAGCACAGTGGAGAGAAACCCTTTAGAAGTGATAAGAGCAGGCCCTTTCTTCTGAACAACTGTGCTGTGCAATCAATGGAGATGTCTTTTGTGACAGGGGAGGCTTGTAAGGACTTCCTAGCCAGCTCAAGCATTTTCGAGCACCATGCCCCTCACAATGAGTGGAAGCCACACAGCAACACCAAGTGTGAGGAGGCCTCTCACTGTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAACCTTCAGCCGCAAAGACTCACTTGTTCAACACCAGAGAGTCCACACTGGAGAAAGGCCTTATGAGTGCGGTGAATGTGGGAAAACCTTTAGCCGCAAACCCATACTTGCTCAGCACCAGAGAATCCACACTGGAGAAATGCCTTATGAGTGTGGCATATGTGGGAAAGTTTTTAATCATAGCTCTAACCTTATTGTACATCAAAGAGTACACACTGGAGCAAGGCCTTACAAGTGCAGTGAATGTGGGAAAGCCTATAGTCACAAATCTACACTTGTTCAGCATGAGAGTATCCATACTGGAGAAAGGCCATATGAGTGCAGCGAATGTGGAAAATACTTTGGTCACAAATACAGACTCATTAAACATTGGAGTGTTCATACTGGAGCAAGGCCTTATGAGTGCATCGCATGTGGGAAGTTCTTTAGCCAAAGCTCTGACCTTATTGCACATCAAAGAGTTCATAATGGTGAAAAGCCTTATGTGTGCAGTGAATGTGGAAAAGCCTTTAGCCACAAACATGTACTTGTTCAGCATCATAGAATTCACACTGGAGAAAGGCCATATAAGTGCAGTGAATGTGGGAAGGCCTTCAGGCAGAGGGCTTCCCTCATCCGCCACTGGAAAATTCACACTGGAGAAAGGCCTTAGGATGGGAGATAATTCCGTTTCCTTGTTCAACATAATAACTGACATCAGAGAGAAGCTCCAAGCATAGCCTTTATGTGTAGCCGACAGCCAGAAGTAGAACTTTATACACTCAAACACTCACCCTGGGGAGGTTCTTCCGAGTGCCAGCTATATGGGAAGCCTTCTGGAGCTATGCTGAATTTTCTAGACTCTTGCTGGAATTTCGTCAAGGCAGTGCCTGTTAGAAGCCATCTGTCTTTGTGCTGGAAGAGTCCTGCCTTGTGCCAAAGTAACCCCAATGTGTTTCAAAAGACAGACCTCTGTACTATTCCCTTCCCTGGAGGGAATCATCAGTAGCCTGAGGCCATCAAGGATTCTCACTTTTTTTCTGCCCCACTACTGGTTTAAGCATGAGCATGACCCAGTTTTAGCCAGAAAAATGGGAGCTTTGTTCTGCTGACCACTGGCAGAGGTTTCCCTTCATGGATATAGTTGATCTCACATGGCACTTGGGACGAATTTTTCTAGCCTTCAAGACACCTGACCTGAAATTGGCTGCCTCATATTCTGGTTTTGCAACAAATGCCTTAATTTTTAGACTATCTGAAATCTTGAGGATTCTGTTCGCTTTGTGGGTTGGGTTGAGAACAGAATTGAGCTAAGCCAGTATGAAGGGAAGAACAGCTTTTGTGAGAGCTCCAACTATCTGTATCTCTGAAGTGATAGTAGGATGGCAAAGACTAGCTCTTATGCTAGTGTCAAGCTAACTTACTTGACTGCTTCAGCTCTCCTAGGAAAGAATGCCAGTCTTTGTAGGCCTAATCTTTTGGTCTATATGTTAAGATTTTTTGTGTAATTGAGGTCACCCTAAGCAGTGGGCATTTGTTGTGATAATCTCTAATGTGTCTGGGAGCAACATGAATTACGTCCCTTGTTCCCAGAAGATACTTCATATTCCCAAGGCTTCTTGAGGAGAATTTGAACTCAGTGGACATGTCAAGATCTCTGAAGTCTATTTTTCAGTAGGCAGTTGATATTGGCTGTCCTCCAGAAGGCCCAGGTAGGAATCATAGTTGGTGCAGAAACCCAGATTAATAAAGGAATGAGAAAACTGCAGCAAACTATAGGGAATATGACCCTTCTAAAGGTACATCCACATGTGTTTCCATTACTCTGGCTCCATTATGAGGGTTTACAGAAATATTTCCATACCTGTGTCTCTTATGGCTAAGGTTACTGTCCAGAAGTCAGTCTAAACATTTTTGCAATAAACTGCACATATTTATAGTGTACCATTTGATAAGTTTTGATACATGTTGGCACTTCTCAAACCAAAAGTTTCCTGATTCCTTTTATATTTTCTCCCTTTCCTTCACCCATCCCCAGGCAACTATTGATCCGTTGTCACTGTAGATTTGTTTGTATTTCCTAGAATTCTACAGAGATAGAGTAATTTAATATGTATTCTAATGTTTTTGGCTTCTTAAACTCTGAAATTAAGGCTCATGGTGGTGTTCTGTGTTTCATAGTTCATTTCTTTTCATTTGTACTTTGCTAAGAGTGTTCCATTGTAGAGAAATAGTTTCAAAGCAAGTGATCCAGGAGAGAACTCACACAAGAACAAAGCCACAGTATCTGTCATTACCTTAAACTGAAAGTGATGAGCCGTCATTTCTGCTATATTTCATAAGTAACCCTAGCTAATCCTGGTTAAAAGTGGAAGAGAACTACACAAAGGTGAAAATAGGGATTTGTGGGGCGTTTTCTTGGACTCTGGTGACCATAATCCTATATGGTTTTTTTCTTTTTCTGTTTTAGTTGTTTAATATGAATTACATTGACTGATTTTTTTAAATGTTAAGCCAACCTTGCATTTCTGTAATAATTCCCATTTGGTCATGATGTATTAGTCATTTAGTATATTGTTGAATTTGATTTGCTATTTTGTTTTGTTTTGTTTTGTTTTTTTGTAACAAGTTTTGCACCAATGTTCACGAGTGATATTTGTCCCTAACTTTCTTTCTTGCTTGCTTGCTTTTTTTTCTTTGTAATTTTATATCTTGCCCAGGTTTGGCTTTGGTATCAGCATAATGCCAGCTTTATAGAGTAAGTTGGGAAGTATTCCTGCTCTTCAGCTCTCTGGAAGAGTTTGTGAATAATTGGTATTATTTCTTCCTTAAATGTTTGGTAGAATTCACCAAGGAAGCTGTCTGGGCCTGGAGTTTGTTTTGTAGGAAAGTTTCTAACTATAAGTTTGATTTCTGTGGTAGATAGAGGGCTGTACAAGTTATATGTACATCTGTCTGTGTGTGTGTTGTCTGTCTGTCACTCTGGCCCTGAAGTGTGTTTTGTAGGACAGCATCTAACTACAAGTTTGATTTCCATGGTAGATGGAGGGCTATACTAGTTATATATACATCTGTCTGTCCGTCCATCTGTTTGTCACTCCATCCATCCATCTATCTCTAGAGTGAGCTTTGATGGTTTGTGTCTTTCAAGGAGTTTTTCTGTTTTATTTAAGTACTCAAATTTTTCAAAATATTATTTTCATACTTGTAGAATTTGTAGTGGTGCAACCTCTTCTATTCCTGATACTGGTAATGTCTATATTTTTCTTTTAACCTTGATTGGTTTGGGTAGAGATTTATCAATTTTACAATTTTATTGATCTTAAAGTACTTGGTATTATTGAATTTTCTGTTTTCTGATATTTTGGGATTTTTCTTTTCCATTTTGAGTTTTACTAATGCCTTCCGCTTTTATTGGATTTCATTTCTTTTGCTACTTTTTAACATGGAAGCTGAGGTCCTTCATTTCAAACCTTTGGGTTTTTTTCCCCTAATATGGGGAAGAGATGTTAATGTTAAAAATCTATCTGAGAACTGCTTTAATTACCTCCCATCAAGCTTGATGTGGTTTCATTTTTTTTTTTGAGACAGTGTCTTGCTCTGTCATCCAGGTTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTTGGACTACAGGCGCCTGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGATCTTGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCAGCCGATGTGGTTTCATTTTAGTTGAGTTTAGGATGTTTTCCAGTTAAAAAAATTCTTCTTGACACATGGCTCTTTTTAAATGTATGTTATTTAATTCCTAAATATTTGGGGATTTTGCTTATCTTTCTGGTAGTTTCTGCAATAATTCCATTGTGGTCAGAGTACATTAAGACTTGAATTATTTACATTTATTGAGATTTGCTTTGTGGCCCAGAATATGGGCTATCTTGGTATGAGTTACATGTTCACTTGAAATGTATACTGTACTCTCGTTTGATGAAGGGGTTCTACAAGTGTTGATTAGGTAAAAATGGTTGATGTTATTTAAGTTTTTTCTATCTTTATTGACATTCTGTGGTTTTGGTTCCAGCAATTATTTTAAGAGGATTGTTGACATCTCTGAATATTAAATTGGATTTACTTCTCTGCAGTTCTGTCAGATTTTGCTTCACATATTTTAGTATGTTTTTATTAGGTGAATAATAAATATTTCCTATTTTATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-ZNF772:NM_001024596:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0214814=zf-UBP=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=6.3),PF099474=DUF2180=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8),PF127602=Zn_Tnp_IS1595=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGACCCTAGCTGTTGCC
R:
TCAGAAGAAAGGGCCTGCTCT
Band lengths:
358-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)