HsaINT0187182 @ hg19

Intron Retention

Gene

ENSG00000105136 | ZNF419

Description

zinc finger protein 419 [Source:HGNC Symbol;Acc:20648]

Coordinates

chr19:58003481-58006048:+

Coord C1 exon

chr19:58003481-58003579

Coord A exon

chr19:58003580-58004223

Coord C2 exon

chr19:58004224-58006048

Length

644 bp

Sequences

Splice sites

5' ss Seq

GAGATAGTT

5' ss Score

-2.41

3' ss Seq

CAACATTTATCTTCTGTCAGGTT

3' ss Score

7

Exon sequences

Seq C1 exon

GACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACCGAGAG

Seq A exon

ATAGTTGGTGGGTGGAGCTCAGGGAGGTGTGAACTCAGGGATGGATTCATATCATACCAGTAGGCCCAGATATTTTGATACCAAGGCAAGGGGTTGTCGCTGATTTCTATCTTTTCTTCCTTAGTCACCCATTTATATCTATTCTGATGTTTGACCTAGGGCCATTCCCCACCTCTCTGTCCTCCATGTTTCACCCAGTCATCAGCAGAACCCTTCAGCAGTGGCTTTCACTGAATGTGTGGTGAGGTGGATGCTTATCCTTGCATAGTCCTTGAGCATCAGCTATTTGGTTGCAGTTGGTTTTTTCTGGACCTGGACATAACCTTCTGTGCCGTGTTCCTGTGTCTCCAGCAGCCAAAGTCCTGTGGAAAGCCATTTGCAGAGGATTGTGTTGGGGACACTGCCTCTCCTCCCTGTGCTATACCCCATCCTTGCATCCTTGGTGCTCATGAGGCCTCCCCAAATCCTTGAGCTGGCCAGATTCAGCACTGCACAGCAGGCCCTTCCCTGCTGAGAGCTAGCCCTCTTTATTTCTGCTAGCAGCCCCAGGCACTAATTACTGGGTGTGTTAGACACATCTGTGAGAGTGCTGCCTCCTCACACCAAAGTCTACATTTACTTCTTCAACATTTATCTTCTGTCAG

Seq C2 exon

GTTGTTGGCATGGAGCCGAGGCTGAGGAGGCTCCTGAGCAGATTGCTTCTGTAGGACTGCTCAGTTCAAACATTCAGCAACACCAGAAGCAGCACTGTGGAGAGAAACCCTTAAAAAGACAAGAGGGCAGGGTCCCAGTTTTGAGGAGTTGCAAAGTTCACCTATCAGAGAAGTCCTTGCAAAGCAGGGAGGTTGGGAAGGCCCTCCTGATCAGCTCAGGTGTTCTCAAGCACCAGGTGACTCACACAGGAGAGAAGTCACATAGGAGCTCCAAAAGTAGGGAGGCCTTTCATGCTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAGCCTTTGGTCAGAAATATTTACTTGTTCAGCACCAGAGACTACATGCTGGGAAAAAGACGTATGAATGCAGTGAATGTGGGAAGTTATTTAGAGATATGTCCAACCTTTTTATACACCAAATAGTTCACACTGGAGAAAGGCCTTACGGGTGTAGTAACTGTGGAAAATCCTTTAGCCGTAATGCTCACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCTTTCAGGCATAATTCCACACTTGTTCAGCATCACAAAATCCACACTGGAGTAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTGTTTAGTTTCAACTCCAGCCTCATGAAACATCAGAGAATTCACACTGGAGAAAGACCTTATAAGTGCAGTGAATGTGGAAAATTCTATAGCCACAAGTCCAACCTTATCAAACATTGGCGTGTTCATACTGGAGAAAGGCCTTACAAGTGCAGCGACTGTGGGAAATTTTTTACCCAATGCTCAAGCCTCATGCAACATCAAAAAGTTCACACTGGAGAAAAGCCTTTTAAGTGCAATGAATGTGGGAGATTCTTTAGAGAGAATTCCACCCTAGTTAGACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAATTTTTTAGCCAAAGCTCAACCCTCATGCAACATCGAAAAGTTCACATTGGAGAAAAGCCTTTTAAGTGCAATGAATGTGGGAGATTGTTTAGAGAGAATTCCAGCCTTGTTAAACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAGTTTTTTCGCCACAACTCCAGTCTTTTTAAACATCGAAGGATTCACACTGGAGAAATGCAGTGATTGTGTGAAATCCTTTAGCCAGCGTTTCAACCTCATTCAACACCAGAAAGTTCACAGTGGAAAAAATCTTGAAGGTAACAGATGGAAATCCGTTAGCCACACCTCCAGTCTCATTCAACACTGGACAGTTTACAATGTGGACAATGTAGTGAATATGGAAAAAGGTTTCAGCCAAAGGCCTAACCCTATTCAACACCAGAAAGTTTACACTGGAGAAAGGCCTTAGGGTGACAGGTTATGTACTGTCTCTGAATCAATATGACCTCACTTAAAACAGAAACTCTGAGGATGGCCTTTATGAGGGAGCTGGCAATTGAACATCATTCATCTAAATATGCACACTGGAGGCAAGATGAGAATTCCTGACAGATTGTCCTTCCTGAGAAGACAGCCCTCTGCCTTGGAGCTCCAGAGAGAGGGAGCCCTGTATTCTTGGCTGTACCCGTCGAATGGAGTTTTGATCTCGCTGAGTTTGGAGTTGGGGGAGGAAAGGAGTGGTCTTGGTTCAAATGTGACTCACTTTTGCTGTTCTTGTGAATGTTAGATCTTCTTTAATAAATATTTATTTCCCATACACCCTTATGACCATT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000105136-ZNF419:NM_001098493:3

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.086

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF0009621=zf-C2H2=WD(100=5.6),PF132401=zinc_ribbon_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=6.3),PF0013017=C1_1=WD(100=12.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF0013017=C1_1=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)

Main Inclusion Isoform:

ENSP00000427723