MmuINT0179842 @ mm9
Intron Retention
Gene
ENSMUSG00000066838 | Zfp772
Description
zinc finger protein 772 [Source:MGI Symbol;Acc:MGI:2385265]
Coordinates
chr7:7154833-7158310:-
Coord C1 exon
chr7:7158224-7158310
Coord A exon
chr7:7157071-7158223
Coord C2 exon
chr7:7154833-7157070
Length
1153 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CAGGATTTCTCTGTGTCCAGGTT
3' ss Score
6.27
Exon sequences
Seq C1 exon
GACTTATACCTTCTGGGATCCATGAGATGACTCAGCTGAAGTCTTGGGGAGAGCCCTCTGTGCCTGCGTTGAGATTCCTGACTCCAG
Seq A exon
GTATGTTATAGGTACATAGAGTGTGGTGGTTTTTGATGTTTGGAGGTATTAATTCTGAAACAGAACTGTCCCTTGGGCATCAGTCTTGAATGTTTTGCCTGTTGCCTTGCAGCCCTGTGATACACAGCTGTTCCTGTATTGTGATGGTGTGCACTGTAAATGTAACTCCTATTTGCCTGATGTAATTGTCATCTGAGAGGCAGTGAGCTTCCAACTGCTAAAATAGGCCTAGTCCTGGAAGCTTCTAGCCTGTGTACAATCTAATCAAGGCCTAGAGTGGTTTCAACCCCCAAGACTTACTATTGAATAAGCTTACCTGTTCTACCTTATTTCTGAACTCTGGCAGGATGGTCAACTCAGCTATTCTGGCTCAAACTCCTTCGGTTCAAACTGGCTTTTTTAGCTTCTGACTGAATTGCTCTGTTTGGCCTCAAAGTAACTCTAGCGATCTGTTCTACTCTTCTGGCTTCTCATTCTCTGGTTCATTCTGACTTCACCTGTGTCTAGCTTGTTCTCTCTGCAACCTGTCAAACTGTTCCGGTCAAAACTTCATCTGAACACTCTGTCTGCTCTGAAGTAGGCTCGCTTTCCTTTCCTATCGCTGATTCATTTAGTCAAATATTTCTCTGATTCATCACTTTGCCCCCCAATTAGAAGTCACTTTCCAACATGGCTGCTTCTTCTACTAACTAACCTTATCTACAATGTTTTGAATTAAAAGTGTGTACTATAGGATTGTCTGTATTCCAGCCAGAGCAGCCATGTTGCTGAATTAAATTTCTTCTACCATGCACTATACCTTGGCAGTATTTAAATTCAGGTTCTTTAGGTACCATGCCATACAGCTCTACACAGCCTTCTGCACTGTGTCTTGAATCCCCAGCAGTTGAAGCATACAGAAAGCTATTGGTGAGGAAAGAGTTTGTTACCGTACCTAGCACTCTTCCCTGTCACTTATTCCATGCTTGTGTTCTTGCTGCTCCTAAGGTCCATAGAACATAAGATATTGACAAATTCAGCATGGTGTTGGACCCTAGCCCCTTTGTTCTGTGAGAAACCTCAGATCACCATTAGTAATAGGTACTGTCTGTCTGTCTGTCTGTCTGTCACTTGATAGTCTACATACCACTAATCAGGATTTCTCTGTGTCCAG
Seq C2 exon
GTTGTTGGATCAAAGTGGACAGTGAAATGTCACCCTTTGAGCAGAGTCCGTCTGCAGAAGGTGCCAGGCCGTCCACCCTACAACAGCACATGCTGTGCTGTGCTGAGACACCCGTGCTAAGCATGGACAATGTGATGATCCTCCAGACCTCCTCGGGTCTTCTAAGGCATCAAGTGACTTATAATGTTGGGGATGCCCCCATGAACATGGAGAGTGGAGAGGCCATTCAGAGTGAGAAGAAGAACTGCATATGCAGTGACTGTGGCAAAACTTTTACTAGCACATCCCACCTCAATCGACACCGGATGATACACACTGGAGAAAAGCCTTTTCAGTGCAGCGAGTGTGGGATGTCCTTCAGCCAAAAAGCCTTTCTTATTAAGCATTTCAGAATTCACACCGGAGAGAAGCCATTCAGGTGTGGGGAGTGTGGCAAAGCCTTCAAGCATAATATCTCCCTCGTATCTCACCAGCGAGTTCACACAGGAGAGACGCCTTTTACCTGCACTGAATGTGGGAAATCATATATGACCAGATCCAACCTTACACGTCACTTTCAAGTTCATGCTGCGGAGAAGCCTTACAGTTGCAGTGAATGTGGCAAAGCATTTAAGGAGAAATCCAGCCTCATTTATCATGCGCGAGTGCACACTCGAGAAAGGCCTTTTCAGTGCAGCGAGTGTGGCAAGTCCTTCAGCCAAAAAGCCTTTCTCATTAAGCATTTCAGAATTCACACCGGAGAGAAGCCATTCAGGTGCAGTGAGTGTGGCAAAACCTTCAAGCACAACTGCTTCCTTGTTGCTCATCAGCGAGTTCACACAGGAGAGACACCTTTTACATGCACTGAATGTGGCAAGTCATACATGAACAGATCCAGCCTTTTATATCATTATCGGGTTCATACCGGAGAAAAGCCGTAGAAGTATACTGTAGTGGTTTGAATAGGTTTGGCCCTATAGATTCATGTGTTTGAATGCTTGGCCCATAGGGAGTGACACTATTAGGTGATGTGGCCTTCTTAGAATAGGCGTGGCCTTGTTGGAGAAAGTGTGTCACTGTGGGGATGGGCTTTGAGGTCCAATGCTCAAGCTCCACCCAGTGTGGGAGAGTCTCTTCCTGGCTGCCTTCACATCAGGTTATAGAACCTCTGCTCTTCTTCACCATGTCTGCCTGCATGCAGCCATGGTTCCTGCCAAGATGATAATGGACTGACCTTCTGAAACTGTAAGCCAGACCCAATTAAATGTTGTCCTTTATAACAGTTGCCGTGCTAATGGTGTCTTTTTGAAGCAATTGAAACCCTAACTAAAACATGCATCGAATGCATTAAATCATTTAAGAAAAAAATCCAGCCTTGTTTATCATGTCCAAGCTCATACAGGGGAAAGATCTTTTGAATGTCGTGAATCTGGGAAGTGTTAAAAAAACAAAACTCACCTCATCAAAGACCAACAGGTTCATAGTAGAGGAAAGGCTTTTATGTGTAGGGCGTGGGGGATGCAGCCTCATTTAACATCAGGGATTTTATGCAGCAAAGCATCATGAGTGCAAAGAATGTGGTAAAGTATTTTGCTACAGGACTGGCTCCACATTGAATAGACTATATGTATTGAGTGCAATGAACATGGGAAATTGTTTCCATGATCTACCCTATCTATCTACACAAAAGGATATTCACTGGACAAAAGTGCTTCAAATGTGGGGAGATTTCACCCACACTTCCATCATATTTAACCTAAGAGGCCATAGTGCAGAGATGCATCATGAACCCACTGAATCTGGGGGAGACTTTGAACAAACTATGCTCTTATTAGCAACACAGACACAACCCAGATAGGTTTGTGAATGCAAACATAGAGAAAGCTTCAGCCATTGACCAAGCTTGTTGAGCCTTAGGAGTGAATGTGACTTTGAGCAGAAAAGTTCTGAGAGTGACTTTTGTGAGGAAGCCAGTCATTGAAAATTACTCATCAAAGAAGAACATGGATCAAGATGAGGATTAGTGCCATCTTCTTATTCCTAAGAAGTTAATGCTTTCTGGGGACTTAGCAAGAGGAAGCTGTGTTCTTGGCTGCACCAGTGTGGAATGGAGTCTCCATGTTACTGACTTTGAATGGGGGAGGAAGAGAGTGACCTCAGTTTAAATAAGACATATATTTTGATTGTTGTTTGTTCTATTGGTTGCCTTTTTTTCCCCTCACTGAATATTGCAGTCCCTGAAATAAATGATCATTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066838-Zfp772:NM_145577:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF132401=zinc_ribbon_2=WD(100=12.1),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF0013017=C1_1=WD(100=20.5),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCTGAAGTCTTGGGGA
R:
GTCGATTGAGGTGGGATGTGC
Band lengths:
358-1511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: