HsaEX0074353 @ hg19
Exon Skipping
Gene
ENSG00000196381 | ZNF781
Description
zinc finger protein 781 [Source:HGNC Symbol;Acc:26745]
Coordinates
chr19:38177352-38182519:-
Coord C1 exon
chr19:38182422-38182519
Coord A exon
chr19:38179965-38180061
Coord C2 exon
chr19:38177352-38177423
Length
97 bp
Sequences
Splice sites
3' ss Seq
GGTCTCACTGTGTTGTCTAGGCT
3' ss Score
4.63
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGAACACAACAGATTTGAGAAGCCTCGGATTAAGGAATAATTTATGAAGCTCCGTTGACTACCGTGGAGAGATCATAATTTGGGGTTCAAGATTCCAG
Seq A exon
GCTGGAGTGCCATGGTGCGATTGTGGTTTCCTGTAGCCTCGACACCCTGGGCTCAAGCGATACTCCCAGGTCAGCCCCCTAGTAGCTAGGACTACAG
Seq C2 exon
TCTGTGTTTTTCCAGAGGTGCCCTGAGGAGCAGGGAAGCATGGCTATTGTGGATGTAAAAGCCATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196381-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACAACAGATTTGAGAAGCC
R:
TGAACATGGCTTTTACATCCACA
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)