HsaEX0074354 @ hg19
Exon Skipping
Gene
ENSG00000196381 | ZNF781
Description
zinc finger protein 781 [Source:HGNC Symbol;Acc:26745]
Coordinates
chr19:38159755-38182519:-
Coord C1 exon
chr19:38182422-38182519
Coord A exon
chr19:38177352-38177423
Coord C2 exon
chr19:38159755-38161457
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTCCATTCTCCTTCTCCAGTCT
3' ss Score
8.14
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGAACACAACAGATTTGAGAAGCCTCGGATTAAGGAATAATTTATGAAGCTCCGTTGACTACCGTGGAGAGATCATAATTTGGGGTTCAAGATTCCAG
Seq A exon
TCTGTGTTTTTCCAGAGGTGCCCTGAGGAGCAGGGAAGCATGGCTATTGTGGATGTAAAAGCCATGTTCAAG
Seq C2 exon
ATATGCTGTCTAGATATGAGACCAAGGAGTTAACTCTTAAGAATGGCACTTTTGAAAAGGAATCATTAAAATGGAAAATAATAGAAAGTGTCAGAAGTTCTTGCCTTGAGGAATCTTTTTTGGGAAATGATTGGAAATGCAAAGGACTCTTTGAGAGACAACAGGAAACTACAGAGGAATATTTCAGGCATGTAACTGTGCCATTTGAAAAAATATCCGAATTCATCCAGCCTACATATTTTCTTCTAAATCAAATAATTCATACTGGAAAGAAACTCTATGAACAAAAAAAAAAATGAGAAAATGTTACTCAACAGGGAAGAATTCATATCAGTGACAAGCTTGACGAAATGTGTGGGAACACCTCTGTATTTTGCACAAATCATATGAAACATCAGACAAATTTTAATGCAAAGAAATGCAATGTATTTAAAGAATGTGGCAGAGACTGCTTGTAACTTTCAACTAACTCAATATCAAATAAGTCATGCTAATCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196381-'1-4,'1-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCTCCGTTGACTACCG
R:
TCCTCAAGGCAAGAACTTCTGAC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)