HsaEX0074354 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:37678623-37689164:-
Coord C1 exon
chr19:37689064-37689164
Coord A exon
chr19:37686451-37686522
Coord C2 exon
chr19:37678623-37678773
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTCCATTCTCCTTCTCCAGTCT
3' ss Score
8.14
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTAGGCTGGAGTGCCATGGTGCGATTGTGGTTTCCTGTAGCCTCGACACCCTGGGCTCAAGCGATACTCCCAGGTCAGCCCCCTAGTAGCTAGGACTACAG
Seq A exon
TCTGTGTTTTTCCAGAGGTGCCCTGAGGAGCAGGGAAGCATGGCTATTGTGGATGTAAAAGCCATGTTCAAG
Seq C2 exon
CCAGGTATGGTGGTATGTGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGATGGGAGGATCCACTTGAGCCCAGGAGGTCAAGTCCAGCCTGGACAACTATCAAGACCCCATCTCTAAAAATAAATAAATAACATTTTAAAAAAGATTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196381-'2-2,'2-1,3-2
Average complexity
C2
Mappability confidence:
100%=33=25%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCGATTGTGGTTTCCTG
R:
GACTTGACCTCCTGGGCTCAA
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development