MmuEX6009675 @ mm9
Exon Skipping
Gene
ENSMUSG00000046185 | Zfp84
Description
zinc finger protein 84 [Source:MGI Symbol;Acc:MGI:107780]
Coordinates
chr7:30553571-30560483:+
Coord C1 exon
chr7:30553571-30553714
Coord A exon
chr7:30556358-30556422
Coord C2 exon
chr7:30560357-30560483
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTCCATTCTGCAGTTT
3' ss Score
8.64
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTCAGCCACATGGCGGAAGTGGCTGGAAAGAGGTTGTTCCGGATCATCTCAGTGCCCTACCCGACCTAACCCGGTACTGTCCTGGTCGGTATTCGCTGGTCGTCCGAGTTCGAAGCCGTGAGATCGCAGTTTATACTTTTGAA
Seq A exon
TTTGTCCAGAGTGCCCGGAAGAGCTGAGAAGCATGGCCGTTGTGGACGTCAGCACCGTGTTTAAG
Seq C2 exon
GAGTTGGTGGTGTTCAGGGACGTGGCTGTGGAGTTCTGTAAGGAGGAGTGGGAGTGTCTGGGCCCTGAGCAGAGGTCGCTATACAGAGATGTGATGCTGGAGAACTACAGCAACTTTGTGTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046185-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCGGATCATCTCAGTGCC
R:
CAGACACTCCCACTCCTCCTT
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: