HsaEX0074381 @ hg19
Exon Skipping
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:33115]
Coordinates
chr19:38011086-38013549:+
Coord C1 exon
chr19:38011086-38011214
Coord A exon
chr19:38011433-38011501
Coord C2 exon
chr19:38013434-38013549
Length
69 bp
Sequences
Splice sites
3' ss Seq
GAAGACGTTACTCTTTCCAGGGA
3' ss Score
4.93
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTTCTCTGGGTGCCCTGCAGACCTTTGGATCCTGCCACCTTGCTGGACGGGAGGGCTCTCTAGCTCCTGCCAGCCCTTAGAGCCACAGGACCTTGGTCACAACATCTACAGAAGGCCCTGCAGCTAAGT
Seq A exon
GGACTCTCCATGGCTAAATGAAGGGAGGATGGTTGGCCCAAGATCCAGGAAGACAGAGTGAAGGGAGAG
Seq C2 exon
GATCTAATCCAGGATCATATGCTGCCTTTAGGTGACACATCCCTTTAGTCTCCTTTAATCAGGAGCAGTTTCTCAGTGTTCATCTTCCATGAAGTCGACATTTTTGAAGAGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227-'2-3,'2-2,3-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGACCTTTGGATCCTGC
R:
GGAGACTAAAGGGATGTGTCACC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)