HsaEX0074384 @ hg19
Exon Skipping
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:33115]
Coordinates
chr19:37999167-38023384:+
Coord C1 exon
chr19:37999167-37999305
Coord A exon
chr19:38014312-38014356
Coord C2 exon
chr19:38023258-38023384
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCCACATGTCTACAGGTG
3' ss Score
8.65
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTCTTTCTGGCAAAGGTAATGACATACGCATCTGTGCCAGCATCCCAAGAGTGAGGCTGGTTTCTGGAAATCCATTCTGACTCTGTGACAGCGGGGATGGATGTGACCTTGCCCGTGGTTAGAAAACAAATTTACTGA
Seq A exon
GTGTCAGATCTTTTTCAAGAACAGCAGAAAATGATCGAATACCAG
Seq C2 exon
ATACCTGTGTCATTCAAAGATGTGGTTGTGGGCTTCACCCAAGAGGAGTGGCACCGGCTGAGTCCTGCTCAGAGGGCCCTGTACCGGGATGTGATGCTGGAAACCTATAGCAACCTCGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGAGTGAGGCTGGTTTC
R:
GTGAAGCCCACAACCACATCT
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)