HsaEX0074383 @ hg38
Exon Skipping
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:HGNC:33115]
Coordinates
chr19:37508265-37532482:+
Coord C1 exon
chr19:37508265-37508403
Coord A exon
chr19:37522532-37522647
Coord C2 exon
chr19:37532356-37532482
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTCCATTCCAGGAT
3' ss Score
12.78
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GCTCTTTCTGGCAAAGGTAATGACATACGCATCTGTGCCAGCATCCCAAGAGTGAGGCTGGTTTCTGGAAATCCATTCTGACTCTGTGACAGCGGGGATGGATGTGACCTTGCCCGTGGTTAGAAAACAAATTTACTGA
Seq A exon
GATCTAATCCAGGATCATATGCTGCCTTTAGGTGACACATCCCTTTAGTCTCCTTTAATCAGGAGCAGTTTCTCAGTGTTCATCTTCCATGAAGTCGACATTTTTGAAGAGTATAG
Seq C2 exon
ATACCTGTGTCATTCAAAGATGTGGTTGTGGGCTTCACCCAAGAGGAGTGGCACCGGCTGAGTCCTGCTCAGAGGGCCCTGTACCGGGATGTGATGCTGGAAACCTATAGCAACCTCGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227_MULTIEX1-3/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAGGTAATGACATACGCA
R:
CCACTGAGACGAGGTTGCTAT
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development