HsaEX6094736 @ hg38
Exon Skipping
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:HGNC:33115]
Coordinates
chr19:37523410-37536530:+
Coord C1 exon
chr19:37523410-37523454
Coord A exon
chr19:37532356-37532482
Coord C2 exon
chr19:37533308-37536530
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTCATTTTTGTTTCAACAGATA
3' ss Score
10.52
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTGTCAGATCTTTTTCAAGAACAGCAGAAAATGATCGAATACCAG
Seq A exon
ATACCTGTGTCATTCAAAGATGTGGTTGTGGGCTTCACCCAAGAGGAGTGGCACCGGCTGAGTCCTGCTCAGAGGGCCCTGTACCGGGATGTGATGCTGGAAACCTATAGCAACCTCGTCTCAGTGG
Seq C2 exon
GTTATGAAGGCACCAAACCAGATGTGATCCTCAGACTGGAGCAGGAAGAAGCACCATGGATTGGTGAGGCAGCATGCCCGGGCTGCCACTGTTGGGGTAAGTGTGATAAATCTAGCAAAAGGGGTACTGAAGGAGGCTGGCACCTTTGGAATTTTGTTCAGCATTCTTCTCTTAAAAGCCTTGAAAGTCCTCCGAGAGCTTCAGCCACGTTAATGACTCTTCAACCTCCATGCAACCCCACCGCCCATATCTGAGTGTTTTTCTCGGCTCTACTTGATTGCACCTCTGCCCTTATGTGCTTGGTCCATCTCTCTTTCTCCAGAATCTTTCCCATGCAGGTATTCTTACAAATAAAAGCTTCTATGATTCTCCTGTTCCTGCTTCCTATTCTCTGTTGTGACAAACTTTCCAGATAAAATGCTTCAGAGCTACCTGCTTTCCCTAATTTCTGCACTCAAATTTAAATCACTCCCATAGACAGATGACTGTGGGATCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAACAGCAGAAAATGATCGA
R:
TTAACGTGGCTGAAGCTCTCG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains