HsaEX6094736 @ hg19
Exon Skipping
Gene
ENSG00000188227 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:33115]
Coordinates
chr19:38014312-38024305:+
Coord C1 exon
chr19:38014312-38014356
Coord A exon
chr19:38023258-38023384
Coord C2 exon
chr19:38024210-38024305
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTCATTTTTGTTTCAACAGATA
3' ss Score
10.52
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTGTCAGATCTTTTTCAAGAACAGCAGAAAATGATCGAATACCAG
Seq A exon
ATACCTGTGTCATTCAAAGATGTGGTTGTGGGCTTCACCCAAGAGGAGTGGCACCGGCTGAGTCCTGCTCAGAGGGCCCTGTACCGGGATGTGATGCTGGAAACCTATAGCAACCTCGTCTCAGTGG
Seq C2 exon
GTTATGAAGGCACCAAACCAGATGTGATCCTCAGACTGGAGCAGGAAGAAGCACCATGGATTGGTGAGGCAGCATGCCCGGGCTGCCACTGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188227-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGATCTTTTTCAAGAACAGCA
R:
GCATGCTGCCTCACCAATCC
Band lengths:
122-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)